PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT50071.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

ARF

Protein Properties

Length: 582aa MW: 64248.7 Da PI: 6.8713

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT50071.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	75	8.5e-24	114	216	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 f+k+ltpsd+++ g +++p+ +a+++ ++ + l+++d +g +We+++iyr++++r++lt+GW++Fv++++L +gD+ vF +++ +++el PHT50071.1 114 FVKILTPSDANNGGGFSVPRFCADSIfprlnfvADPPVQ--NLVIRDIHGSEWEFRHIYRGTPRRHLLTTGWSKFVNSKKLVSGDSAVFIRKN-RTGEL 209 89*******************999*98767777..5********************************************654.88999 PP EEEEE-S CS B3 93 vvkvfrk 99 +v+v+r+ PHT50071.1 210 YVGVRRA 216 **996 PP
2	Auxin_resp	78	2.3e-26	262	345	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 a++ a+ +++Fev +Pr +++Fvvk+e ve++ ++ ++vG+R+kma+etedss++ + +Gtv++v ++ W++S+Wr+L+ PHT50071.1 262 AVEMAARGMPFEVSCYPRPDWANFVVKAEAVEASSNMFWTVGTRVKMAVETEDSSRTACfQGTVSSVILPENGPWRGSPWRMLQ 345 6788999*************************************************99********************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 582 aa Download sequence
MQLLTAAAGN DVDPTIWRAI AGNSVRIPAV GSRAYYFPQG HAEHASSTSP VLLSGVIPPF 60 ILCRVLSVRF LADAVTDEAF AKIFLVPVNQ CDGNDVTTMN VDEEEDVEKE VVSFVKILTP 120 SDANNGGGFS VPRFCADSIF PRLNFVADPP VQNLVIRDIH GSEWEFRHIY RGTPRRHLLT 180 TGWSKFVNSK KLVSGDSAVF IRKNRTGELY VGVRRAIRGN ENCQRWTSTL LKREQTSSSG 240 SNGEVRWRTG QGRLPMEAVK EAVEMAARGM PFEVSCYPRP DWANFVVKAE AVEASSNMFW 300 TVGTRVKMAV ETEDSSRTAC FQGTVSSVIL PENGPWRGSP WRMLQITWDE PEVLQHAKRV 360 NPWQVACILP TPQLHFGFPP SKKIKLLNWL PHDGEEKRFF PMTGLSNPMI GLCSPSLGNC 420 TSFSAGMQGA RQNQICVSSL SNVKSNNNLG LCTNNSLDEE INPKLESVST KLNIGSSYSD 480 NLSPDSQSSV HFWDNELVAK PGSSSLTKQR VNSFLLFGKV IHVENVGGFD GFGCCENDSI 540 QVFKEIDGAF KSNVSQNKPC FELFDNVDVQ HQRASAVEAC SL

Sequence ? help Back to Top

Protein Sequence Length: 582 aa Download sequence

MQLLTAAAGN DVDPTIWRAI AGNSVRIPAV GSRAYYFPQG HAEHASSTSP VLLSGVIPPF  60
ILCRVLSVRF LADAVTDEAF AKIFLVPVNQ CDGNDVTTMN VDEEEDVEKE VVSFVKILTP  120
SDANNGGGFS VPRFCADSIF PRLNFVADPP VQNLVIRDIH GSEWEFRHIY RGTPRRHLLT  180
TGWSKFVNSK KLVSGDSAVF IRKNRTGELY VGVRRAIRGN ENCQRWTSTL LKREQTSSSG  240
SNGEVRWRTG QGRLPMEAVK EAVEMAARGM PFEVSCYPRP DWANFVVKAE AVEASSNMFW  300
TVGTRVKMAV ETEDSSRTAC FQGTVSSVIL PENGPWRGSP WRMLQITWDE PEVLQHAKRV  360
NPWQVACILP TPQLHFGFPP SKKIKLLNWL PHDGEEKRFF PMTGLSNPMI GLCSPSLGNC  420
TSFSAGMQGA RQNQICVSSL SNVKSNNNLG LCTNNSLDEE INPKLESVST KLNIGSSYSD  480
NLSPDSQSSV HFWDNELVAK PGSSSLTKQR VNSFLLFGKV IHVENVGGFD GFGCCENDSI  540
QVFKEIDGAF KSNVSQNKPC FELFDNVDVQ HQRASAVEAC SL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77850.1	1e-152	ARF family protein