PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT50083.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family MIKC_MADS
Protein Properties Length: 201aa    MW: 23147.9 Da    PI: 6.9362
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT50083.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF79.23e-25958150
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                krien   rqvtf+kRr+g+lKKA+ELSvLCdae+ + ifs +gklye +
  PHT50083.1  9 KRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGLFIFSAHGKLYELA 58
                79*********************************************965 PP
2K-box59.11.8e-20821748100
       K-box   8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                 ++ e++ +  ++e++ Lk+ei+ Lq+ +  + G + ++++l eL++Le+ Le  + +iRs K+++++++i+ l++ke  l+ +nk L+ k++e
  PHT50083.1  82 DAMEKQPQDPKEEINMLKNEIDILQKGLSYMYGGGAGTMTLDELHSLEKYLEIWMYHIRSAKMDIMFQEIQLLKNKEGILEAANKFLQDKIDE 174
                 4678899999********************************************************************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    
MARGKVQMKR IENPVHRQVT FCKRRAGLLK KAKELSVLCD AEIGLFIFSA HGKLYELATK  60
GSMQGLIERY LKSTKGTEVA EDAMEKQPQD PKEEINMLKN EIDILQKGLS YMYGGGAGTM  120
TLDELHSLEK YLEIWMYHIR SAKMDIMFQE IQLLKNKEGI LEAANKFLQD KIDEQYTLTN  180
MTQTLTDIQC QLTVQNEIFQ F
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71692.15e-80MIKC_MADS family protein