PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT50166.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family GRAS
Protein Properties Length: 510aa    MW: 56779.7 Da    PI: 5.9575
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT50166.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS339.84.8e-1041245031373
        GRAS   1 lvelLlecAeavssgdle..laqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykal...ppsetseknsseelaalklfsevsPilkf 93 
                 lv+lL+++Aea+s  +++  la+ +L rl+elasp+g ++m+Rlaa+ft AL+a l +  s++ +a    +p+ ++e+++ ++laa++l++++sP++kf
  PHT50166.1 124 LVHLLMAAAEALSGVNKSreLARVILVRLKELASPNGaTNMERLAAHFTDALQALLDGAASGTLHAKhmfSPNYKDEQHQGDVLAAFQLLQDMSPFVKF 222
                 68***********85554449****************99*****************9977777655411266666666699****************** PP

        GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp..slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                 +h+taNqaIle+v++++rvHi+D+di++G+QW++L+qa+ sR++gpp  +lRiT+++++ sg  s  +++etg+rL+ fA+++g pf+f+    ++ e+
  PHT50166.1 223 GHFTANQAILESVAHDRRVHIVDYDIMEGIQWASLMQAFVSRKDGPPtpHLRITALSRSGSGrrSFGTVQETGRRLTAFAASIGQPFSFHHCRLDSDET 321
                 *******************************************776556*********888899999************************9999**** PP

        GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh..nsesFlerflealeyysalfdsleaklpreseerikv 285
                 +++ +L++ +gEal++n++l+l ++  +  ++     ++L+  k+l+Pk+v++ve+e+    ++e F+ rf+++l++ysal+dslea++p +s++r+ v
  PHT50166.1 322 FKPTNLKLVRGEALIINCMLHLPHFSYRASDS---VASFLSGSKNLNPKLVTLVEEEIRPigEEEGFVGRFMDTLHHYSALYDSLEAGFPLQSRARTLV 417
                 ************************98554444...459*******************987767889********************************* PP

        GRAS 286 ErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee.sgslvlgWkdrpLvsvSaW 373
                 Er++l+++i+  +a   + r+e+++   +W e+l+++GF + ++s  + +qaklll  ++ dgyrvee   + lvlgWk+r+L+s+S W
  PHT50166.1 418 ERVFLRPHITGSLARIYRVREEDER--YSWGEWLGAVGFCKSNISFANHCQAKLLLGLFN-DGYRVEEIgTNKLVLGWKSRRLFSASIW 503
                 ******************9877776..89*******************************.******9768999*************** PP
Sequence ? help Back to Top
Protein Sequence    Length: 510 aa     Download sequence    
MAMMVDETIP DFDYYGSLST TTTTTTATTT TSSSENDHDH GCTWNDWSPV LDWGAFSGGD  60
NFQDLIESMI QGHNSTGGVN VNFHPSVNYF WKSISSEDSA GLIEEDYLED SNNNQSADIN  120
GLKLVHLLMA AAEALSGVNK SRELARVILV RLKELASPNG ATNMERLAAH FTDALQALLD  180
GAASGTLHAK HMFSPNYKDE QHQGDVLAAF QLLQDMSPFV KFGHFTANQA ILESVAHDRR  240
VHIVDYDIME GIQWASLMQA FVSRKDGPPT PHLRITALSR SGSGRRSFGT VQETGRRLTA  300
FAASIGQPFS FHHCRLDSDE TFKPTNLKLV RGEALIINCM LHLPHFSYRA SDSVASFLSG  360
SKNLNPKLVT LVEEEIRPIG EEEGFVGRFM DTLHHYSALY DSLEAGFPLQ SRARTLVERV  420
FLRPHITGSL ARIYRVREED ERYSWGEWLG AVGFCKSNIS FANHCQAKLL LGLFNDGYRV  480
EEIGTNKLVL GWKSRRLFSA SIWNTTDTDL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-149GRAS family protein