PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT50229.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB

Protein Properties

Length: 332aa MW: 37596.5 Da PI: 7.1026

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT50229.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57	4.5e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEd +++ +v+ +G g+W++++++ g++R++k+c++rw +yl PHT50229.1 14 RGPWTAEEDAKILAYVASHGIGNWTLVPQKAGLNRCGKSCRLRWTNYL 61 89********************************************97 PP
2	Myb_DNA-binding	45.3	2e-14	68	110	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +++T E+e +++++k G++ W++Ia++++ gRt++++k++w++ PHT50229.1 68 DNFTSLEEECILELHKTIGSR-WSLIAKRLP-GRTDNDVKNYWNT 110 589****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 332 aa Download sequence
MGRPPCCDKA NVKRGPWTAE EDAKILAYVA SHGIGNWTLV PQKAGLNRCG KSCRLRWTNY 60 LRPDLKHDNF TSLEEECILE LHKTIGSRWS LIAKRLPGRT DNDVKNYWNT KLKKKLVNMG 120 IDPVTHKPFA QVFAEYGKIS GLPIQNAKNH IHLPNNTTEK NHVCMESKQF PFSNGTPHAK 180 FVHKIMNDQL QENYTKNYTW DSKETLQTHS SLLISTSTSC NPTVHSFSPS FSSLQSQVHT 240 MPSSTSTCNW NEFIFGDPFT SSGAEQKQET FLSNLLQKEN PTCGEVTEVE EKQPVEEATC 300 SSAMDSFVDT ILANEKQMLM DFPPLLDVYL DY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G28470.1	2e-77	MYB family protein