PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT50501.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

Trihelix

Protein Properties

Length: 669aa MW: 74266.9 Da PI: 6.8868

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT50501.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	91.6	8.1e-29	60	144	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+ aL+++r+em+ +++++lk+plWeevs+km++ g++rs+k+Ckek+en+ k++k++k+g+ ++++++ ++++f+qlea PHT50501.1 60 RWPRQETIALLKIRSEMDLVFKDSSLKGPLWEEVSRKMADLGYHRSSKKCKEKFENVYKYHKRTKDGRASKADGK--SYRFFEQLEA 144 8******************************************************************975555..5*****85 PP
2	trihelix	98.2	7.1e-31	471	555	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+k ev Li++r++++ +++++ k+plWee+s+ m++ g++r++k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+ l+ PHT50501.1 471 RWPKAEVESLIKLRTNLDMKYQENGPKGPLWEEISSSMKKIGYNRNAKRCKEKWENINKYFKKVKESSKKR-PEDSKTCPYFHMLD 555 8*******************************************************************8.99*******998 PP

Sequence ? help Back to Top
Protein Sequence Length: 669 aa Download sequence
MLGVSGMISD GDGTGGENPE SGGGGATSGG SSEIGLGGGG GSSSGGFMIE EGEKNSGGNR 60 WPRQETIALL KIRSEMDLVF KDSSLKGPLW EEVSRKMADL GYHRSSKKCK EKFENVYKYH 120 KRTKDGRASK ADGKSYRFFE QLEALENTQS HHSLLAPSNS RPPPPPLEAT PINMAMPMPT 180 SNVQVQASQG TGTPHLVTVS SAPPPPPNIP FAPSHQNVQL SSPVAPSSQP AVNPINNIPH 240 QVNANLPAHQ NISAMSYSTS SSTSSDEDIQ RRHKKKRKWK DYFEKFTKDV INKQEESQRK 300 FLEKFEQKER DRMVREETWK AQEMARLNRE HDLLVQERAM AAAKDAAVIS FLQKITEQKN 360 IQIPNSINVA LPSAQVQLQL QMPENPPPAP APTHSPQPQQ QTQPTVVVSP APQPSPALVV 420 PVSLPMTIPA PAPALMQSSL PLTPPVPAKN VELAPKNDNG GESHSPASSS RWPKAEVESL 480 IKLRTNLDMK YQENGPKGPL WEEISSSMKK IGYNRNAKRC KEKWENINKY FKKVKESSKK 540 RPEDSKTCPY FHMLDALYKE KAKNETSSLT SGFPLNPENN PMEPIMARPE QQWPLPRHHQ 600 QHQHQHHQQH ESSRMDHDHD HESDNMDEDD HDDDDEDEDE ENAYEIVANK QQPSMASANT 660 TTTTATTTV

Sequence ? help Back to Top

Protein Sequence Length: 669 aa Download sequence

MLGVSGMISD GDGTGGENPE SGGGGATSGG SSEIGLGGGG GSSSGGFMIE EGEKNSGGNR  60
WPRQETIALL KIRSEMDLVF KDSSLKGPLW EEVSRKMADL GYHRSSKKCK EKFENVYKYH  120
KRTKDGRASK ADGKSYRFFE QLEALENTQS HHSLLAPSNS RPPPPPLEAT PINMAMPMPT  180
SNVQVQASQG TGTPHLVTVS SAPPPPPNIP FAPSHQNVQL SSPVAPSSQP AVNPINNIPH  240
QVNANLPAHQ NISAMSYSTS SSTSSDEDIQ RRHKKKRKWK DYFEKFTKDV INKQEESQRK  300
FLEKFEQKER DRMVREETWK AQEMARLNRE HDLLVQERAM AAAKDAAVIS FLQKITEQKN  360
IQIPNSINVA LPSAQVQLQL QMPENPPPAP APTHSPQPQQ QTQPTVVVSP APQPSPALVV  420
PVSLPMTIPA PAPALMQSSL PLTPPVPAKN VELAPKNDNG GESHSPASSS RWPKAEVESL  480
IKLRTNLDMK YQENGPKGPL WEEISSSMKK IGYNRNAKRC KEKWENINKY FKKVKESSKK  540
RPEDSKTCPY FHMLDALYKE KAKNETSSLT SGFPLNPENN PMEPIMARPE QQWPLPRHHQ  600
QHQHQHHQQH ESSRMDHDHD HESDNMDEDD HDDDDEDEDE ENAYEIVANK QQPSMASANT  660
TTTTATTTV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	270	277	QRRHKKKR
2	270	278	QRRHKKKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76880.1	6e-48	Trihelix family protein