PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT50695.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB

Protein Properties

Length: 347aa MW: 39266.4 Da PI: 6.1006

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT50695.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	60.6	3.3e-19	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++lvd++ ++G g+W++ ++ g++R++k+c++rw +yl PHT50695.1 14 KGPWTPEEDQKLVDYIDKHGHGSWRALPKLSGLNRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	55.3	1.5e-17	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++++eE++ +++++ lG++ W++Ia +++ gRt++++k++w+++l PHT50695.1 67 RGKFSEEEEQTILHLHSILGNK-WSAIATHLP-GRTDNEIKNFWNTHL 112 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence
MGRSPCCDEN GLKKGPWTPE EDQKLVDYID KHGHGSWRAL PKLSGLNRCG KSCRLRWTNY 60 LRPDIKRGKF SEEEEQTILH LHSILGNKWS AIATHLPGRT DNEIKNFWNT HLKKKLIQMG 120 YDPMTHRPRT DLFASLPNII ALANLLQHHP LEDQAIRLQA EAAQIAKIQY LQFLLQSSNN 180 NYNPIPPTTS SNTQYYNNLG DIGAFNLTNF VKENSTTPSL NLSNLENQTL FSNETGSQLL 240 HNPDNTQQVP FNFQTHLNNN NNNDMSDIDG NNFNFDLEDN SPSSPLNNTI IPSPPSSSHL 300 PHLTEISISN NNQGDSSCNS SNNVADQGTS SSYWPELFFE EHFMHDI

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence

MGRSPCCDEN GLKKGPWTPE EDQKLVDYID KHGHGSWRAL PKLSGLNRCG KSCRLRWTNY  60
LRPDIKRGKF SEEEEQTILH LHSILGNKWS AIATHLPGRT DNEIKNFWNT HLKKKLIQMG  120
YDPMTHRPRT DLFASLPNII ALANLLQHHP LEDQAIRLQA EAAQIAKIQY LQFLLQSSNN  180
NYNPIPPTTS SNTQYYNNLG DIGAFNLTNF VKENSTTPSL NLSNLENQTL FSNETGSQLL  240
HNPDNTQQVP FNFQTHLNNN NNNDMSDIDG NNFNFDLEDN SPSSPLNNTI IPSPPSSSHL  300
PHLTEISISN NNQGDSSCNS SNNVADQGTS SSYWPELFFE EHFMHDI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34670.1	1e-108	MYB family protein