PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT50713.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family HD-ZIP
Protein Properties Length: 261aa    MW: 29952.9 Da    PI: 5.09
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT50713.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.61.2e-192173456
                -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                ++++  +q+++Le+ Fe +++++ +++ ++A++lgL+ rqV +WFqNrRa++k
  PHT50713.1 21 KRRLRVDQVQALEKIFEVDNKLDPDRKVKIAQELGLQPRQVAIWFQNRRARWK 73
                4567889*********************************************9 PP
2HD-ZIP_I/II1253.5e-4020110292
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                  kkrrl  +qv++LE+ Fe ++kL+p+rKv++a+eLglqprqva+WFqnrRAR+ktkqlE+dy+ Lk++y+al+++ +++e+e+e L +elk
   PHT50713.1  20 KKRRLRVDQVQALEKIFEVDNKLDPDRKVKIAQELGLQPRQVAIWFQNRRARWKTKQLERDYNILKANYEALQHNYSKVEQEKEGLITELK 110
                  9*************************************************************************************99987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    
MLDGLEDEDG IEESGCGTGK KRRLRVDQVQ ALEKIFEVDN KLDPDRKVKI AQELGLQPRQ  60
VAIWFQNRRA RWKTKQLERD YNILKANYEA LQHNYSKVEQ EKEGLITELK GLKEKLGEET  120
ISPAFHRPQE LILNKLKNSS DFVDSKDGSS DSDSSGVMNE ENYTNTTTLN YQQLMPKVSS  180
YNNALDHLSL SSSTYTQLLD HPRASNSTSS SMRGYNNNND HQQQGVGRME EQNGFTTEDS  240
CNIYSVDQAP NLYWYFSDHR N
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12049KKRRLRVDQVQALEKIFEVDNKLDPDRKVK
26876RRARWKTKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G40060.13e-38HD-ZIP family protein