PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT50848.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family GATA
Protein Properties Length: 305aa    MW: 33364.4 Da    PI: 6.2669
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT50848.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.36.8e-16207243135
        GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                 C++Cg+++  Tp +Rrgpdg++tLCnaCGl+++ kg+
  PHT50848.1 207 CHHCGVSEncTPAMRRGPDGPRTLCNACGLKWANKGT 243
                 **********************************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    
MIPENPRPLQ ARPYEDHMHA PLQSEEDDED GGAYEDDGDE ETMDEAEDVS MKVLNQRQYG  60
GRGGGGVVQV CRSSELTLAF EGEVYVFPAV TPDKVQAVLL LLGGCDIPTA VPTVELPFDK  120
KVEDFPKQAN PSRRFASLVR FREKRKERCF DKKIRYSVRK EVAQRMHRKN GQFASLKSSS  180
GSSSCDSAKS SLEGDGTQQS GTVLGKCHHC GVSENCTPAM RRGPDGPRTL CNACGLKWAN  240
KGTLRDLSKA ARKISVERNE LGTPDNPVKA SAEGSLGHSA DVEKKTVVDF GNASKTELEI  300
PTKFD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16066GGRGGGG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.22e-59GATA family protein