PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT50856.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family MYB_related
Protein Properties Length: 296aa    MW: 32400.7 Da    PI: 6.6651
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT50856.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.61.4e-08177221144
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHH..HHTTTS-HHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIar..tmgkgRtlkqcksrw 44 
                      r++W++ Ed  l+ av++ G ++W++I +    g  Rt+ q+  rw
       PHT50856.1 177 RKPWSAAEDMELIAAVQKCGEKNWASILKadFKG-DRTASQLSQRW 221
                      789************************7621455.89999988888 PP
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    
MTMLTLLQQV AQVKDWKIDW NELVKKTTTG ITNAREYQMV WLHLSYRQVL LDKVDDDAQP  60
LDDESDLESD LEAFPPISNE TSLEAAACVK VLFASGAPCD TNMSDGNTIE APLTISMPNR  120
QTSGTAAENS FHGISAYGAK LTLPVTVQMQ PLPSVTAAEG LDTSGPGTAS YHPRRRRKPW  180
SAAEDMELIA AVQKCGEKNW ASILKADFKG DRTASQLSQR WAIIRKRNMA RNASQLSEAQ  240
LAARHAMSMA FGDNLRAACP TSTNGNSFNS VSSILTICLL THYCERMVKK QSGNTA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1173179PRRRRKP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09710.16e-70MYB_related family protein