PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT50935.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB

Protein Properties

Length: 427aa MW: 48061.5 Da PI: 8.6821

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT50935.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.6	4.3e-16	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd +l+ +++q G+g +W + ++++g++R++k+c++rw++yl PHT50935.1 14 RGPWSPEEDAKLKSYIEQNGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 62 89*********************************************97 PP
2	Myb_DNA-binding	35.5	2.3e-11	70	111	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++ eEd ++ + G++ W+ Ia+ ++ gRt++++k++w++ PHT50935.1 70 GFSDEEDRIICSLYISIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 699***************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 427 aa Download sequence
MGRAPCCDKN NVKRGPWSPE EDAKLKSYIE QNGTGGNWIA LPQKIGLKRC GKSCRLRWLN 60 YLRPNIKHGG FSDEEDRIIC SLYISIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLFGK 120 QRQKQGSRKG KEIKSTSSIS TSNNMNQNPC WPELQPLPYS NNEPRFINND HTSIRKLLIK 180 LGGKFSENDQ LTNVVPNSHE YPIDNSSSMH LMYQDHINVI SSAPIDHSVF NITAPNIDLY 240 NMDGAASNFT AEFEHMINTS QQKIDGLEFL YENLVIDKFA STSGGNLDWE SMNPYVLPLP 300 PIVASSDGGF QQGVIFQQVS LRWLACGFLA SPPYHTKSKE GLVVSNKDIE SGTMDETKSQ 360 EIESLKKKNL RLRQQMMEMY RAWASGLPLP LFPTFDPAKT LSLPPKSQSQ FSTIVDAPQH 420 ASESIPC

Sequence ? help Back to Top

Protein Sequence Length: 427 aa Download sequence

MGRAPCCDKN NVKRGPWSPE EDAKLKSYIE QNGTGGNWIA LPQKIGLKRC GKSCRLRWLN  60
YLRPNIKHGG FSDEEDRIIC SLYISIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLFGK  120
QRQKQGSRKG KEIKSTSSIS TSNNMNQNPC WPELQPLPYS NNEPRFINND HTSIRKLLIK  180
LGGKFSENDQ LTNVVPNSHE YPIDNSSSMH LMYQDHINVI SSAPIDHSVF NITAPNIDLY  240
NMDGAASNFT AEFEHMINTS QQKIDGLEFL YENLVIDKFA STSGGNLDWE SMNPYVLPLP  300
PIVASSDGGF QQGVIFQQVS LRWLACGFLA SPPYHTKSKE GLVVSNKDIE SGTMDETKSQ  360
EIESLKKKNL RLRQQMMEMY RAWASGLPLP LFPTFDPAKT LSLPPKSQSQ FSTIVDAPQH  420
ASESIPC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49690.1	1e-77	MYB family protein