PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT51234.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

DBB

Protein Properties

Length: 300aa MW: 33468.6 Da PI: 7.1134

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT51234.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	25	3.9e-08	4	43	5	38
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 C+ ++ +e+++fC ++ lC++C H+ H+ PHT51234.1 4 QCDVCNTNEATFFCVADEAALCNTCDHRVHHAnklagkHQ 43 7****99****************9964446777776 PP
2	zf-B_box	27.8	5.1e-09	54	92	2	38
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38 + + C+ ++e ++ lfC++++ lC++C +++Hk Ht PHT51234.1 54 QVPLCDICQERRAFLFCQQDRAILCRECDVSIHKVneHT 92 6789*****************************656665 PP

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence
MKIQCDVCNT NEATFFCVAD EAALCNTCDH RVHHANKLAG KHQRFSLLQP SAKQVPLCDI 60 CQERRAFLFC QQDRAILCRE CDVSIHKVNE HTQKHNRFLL TGVKISTNSS LYTSSESPSV 120 TSSTTNQDSA TNVNKSQTCN KKPLPLPVSV SSSIIAQEVS MAANIGENGY TSSISEYLEM 180 LPGWHVEDFL NCSTIPTNGF CKIGDNDVFP IWDTEIESTL NSFSPESIGI WVPQAPPAPP 240 QKNQNQIFPQ NINFGGQIEF KNSKEVTCNK SSRKWRDDNS FAVPQISPSS ISFKRSRTLW

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75540.1	6e-73	DBB family protein