PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT51447.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family ARF
Protein Properties Length: 935aa    MW: 103016 Da    PI: 5.1534
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT51447.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B377.91.1e-24146247199
                 EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                 f+k+lt sd++++g +++p++ ae+       ++++++ ++l+++d++ ++W++++iyr++++r++lt+GW+ Fv a++L++gD+v+F   ++++ +l+
  PHT51447.1 146 FCKTLTASDTSTHGGFSVPRRAAEKLfppldySMQPPT-QELVVRDLHDNTWTFRHIYRGQPRRHLLTTGWSMFVGAKRLRAGDSVLFI--RDEKSQLL 241
                 99*********************999*****9555554.49************************************************..45677789 PP

                 EEEE-S CS
          B3  94 vkvfrk 99 
                 ++v+r+
  PHT51447.1 242 LGVRRA 247
                 999997 PP
2Auxin_resp115.83.7e-38272355183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 aahaa+++s+F+++YnPra++seFv+++ k++k+++ +++svGmRf m+fete+s +rr++Gt+ g+sdldp+rWp+SkWr+L+
  PHT51447.1 272 AAHAAANRSTFTIFYNPRACPSEFVIPLTKYRKSVYsTQLSVGMRFGMMFETEESGKRRYMGTIGGISDLDPLRWPGSKWRCLQ 355
                 79*********************************989*********************************************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 935 aa     Download sequence    
MGSAEEKCKP GSLVSGGHTL LEEMKLLKEM QDHTGARKLI NSELWHACAG PLATLPQVGS  60
LVYYFPQGHS EQVAVSTNRT ATSQIPNYPN LASQLLCQVH NVTLHADKET DEIYAQMSLQ  120
PVNSERDVFP IPDFGLKPNK HPTEFFCKTL TASDTSTHGG FSVPRRAAEK LFPPLDYSMQ  180
PPTQELVVRD LHDNTWTFRH IYRGQPRRHL LTTGWSMFVG AKRLRAGDSV LFIRDEKSQL  240
LLGVRRANRQ QTSLPSSVLS ADSMHIGVLA AAAHAAANRS TFTIFYNPRA CPSEFVIPLT  300
KYRKSVYSTQ LSVGMRFGMM FETEESGKRR YMGTIGGISD LDPLRWPGSK WRCLQVEWDE  360
PGCGDKQSRV SPWEVETPES LFIFPSLTAG LKRPYQSTFL GAQPEWDNLM HRPFMRVPEN  420
VYGDLQSSSI SNLWSEQLMK MLVRPPGVTG LQCGIPTVQD IKVVLPQEAQ RNVIQAAGNL  480
KPDLTTVEAT PAQSETNSEV ILNQPGVVNS ISSMQAKSQP PEKVGIDTVG KSSEQVKETS  540
TSSGKLDQFQ SVEQCTEDKV TVKPASTPNL PTDASATASN HNSLSQLQAS PWLIQAQLES  600
QIPPNTQIYS AASNNILHCS TNNEWNPSSV QSAAGLLRCP VSTSTLSKHD NSFILPDTVG  660
TGLAPIGQDL WNHQLNDVKC FSQTNLPVPL DITNMQFLPD SYGFKDLSEE SHNQSDIYSC  720
LNFDSNSGST VIDNSVSSTV LDEFCTLKHT DFQNPSDFLL GNISSSQDVQ SQITSASLAD  780
SQNFSVQEFA DNSGGASSSN VNFDECNLLQ NNSWQQVAPR VRTYTKIQKA GSVGRSIDVS  840
GFKTYDELRA EIERMFGLEG LLNDSRGSGW KLVYVDFEND VLLVGDDPWE EFVGCVRCIR  900
ILSPTEVQQM GEEGMQLLNS AGLQGINGST SEYPN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19850.10.0ARF family protein