PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT51529.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 308aa    MW: 34778.1 Da    PI: 6.559
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT51529.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF42.58.3e-141050242
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                +ien   r+ ++ kR++g +KKA+EL +LC++e a ii s+
  PHT51529.1 10 FIENINERKASYKKRQKGFIKKAHELKTLCNVEMAAIICSP 50
                8*************************************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    
MGRKKIKLAF IENINERKAS YKKRQKGFIK KAHELKTLCN VEMAAIICSP YHIEPEVIPN  60
NDVAISTFTK FRELPEFMQS KNMVTQKKFT EERKVKIEEQ LRKIRKENRV KDLTNKMYEM  120
LNGKDTQVCM SLNNLSDLDY VINENIKKVS EMIKGQGGGE SSTSNYQKPT IGPMVPSGSI  180
FEGPRDLLLY PTGTPVLVVP LVDPLIIPSG DNLERPRAPL LDSDVASMEM IPLEASSLVP  240
LAYTSQVSQP QTNPSMSLPL MNASVPMNNR ENYSVGFPTS PPLSEMLDWN DDIVTLLEDP  300
YFNNISFQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1326RKKIKLAFIENINERKASYKKRQK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.14e-31M-type_MADS family protein