PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT51661.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

TCP

Protein Properties

Length: 437aa MW: 46981.9 Da PI: 6.7235

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT51661.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	108.9	7.6e-34	30	169	3	122
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...........................ssssasece 74 g+kdrhsk++T++g+RdRRvRl a++a++f+d+qd+LG+d++sk+++WL+++ak++i+el+++ PHT51661.1 30 GRKDRHSKVCTAKGPRDRRVRLAAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKASIDELAELppwkptigpttnntldqekdlgiqceeA-------- 120 89*************************************************************9988877766555443333332222220........ PP TCP 75 aesssssasnsssg........................kaaksaakskksqksaasalnlak.esrakarara 122 + + ++ ++n+++ +s ++a+a a PHT51661.1 121 -------------QfvgdnnddnvvgpsskramimlrnE-----------SDTRVLHQNKSAsSSGENANASA 169 .............11222222235554332233333220...........22222222222212222222222 PP

Sequence ? help Back to Top
Protein Sequence Length: 437 aa Download sequence
MGTSSRFGSR NSGGGEIVEV QGGHIIRSIG RKDRHSKVCT AKGPRDRRVR LAAHTAIQFY 60 DVQDRLGYDR PSKAVDWLIK KAKASIDELA ELPPWKPTIG PTTNNTLDQE KDLGIQCEEA 120 QFVGDNNDDN VVGPSSKRAM IMLRNESDTR VLHQNKSASS SGENANASAS ANASFLPPSL 180 DSDAISDTIK SFFPMGGGST EGNSSAMQFQ TFQEHNLLSR TSSQSQELKL SLQSFQDPIL 240 LDFQNLQSQH HNRHTEQAQT QFQASNFFTG STPLIGFGAS GWPEHQHLPV ELGRMQRLAA 300 ALAGGNNSTG IALGGGAVTG AGGYLFNSPP APPLLQQLFG QNQFLFQRGP LQSSYSPSIR 360 AWLDPSAIAI TTTDSIHHHQ YHQAVLPMCS ASVSGIGFAS EVGGFSGFDI PARIQGEIEE 420 HDGGSNKPSS ASSDSRH

Sequence ? help Back to Top

Protein Sequence Length: 437 aa Download sequence

MGTSSRFGSR NSGGGEIVEV QGGHIIRSIG RKDRHSKVCT AKGPRDRRVR LAAHTAIQFY  60
DVQDRLGYDR PSKAVDWLIK KAKASIDELA ELPPWKPTIG PTTNNTLDQE KDLGIQCEEA  120
QFVGDNNDDN VVGPSSKRAM IMLRNESDTR VLHQNKSASS SGENANASAS ANASFLPPSL  180
DSDAISDTIK SFFPMGGGST EGNSSAMQFQ TFQEHNLLSR TSSQSQELKL SLQSFQDPIL  240
LDFQNLQSQH HNRHTEQAQT QFQASNFFTG STPLIGFGAS GWPEHQHLPV ELGRMQRLAA  300
ALAGGNNSTG IALGGGAVTG AGGYLFNSPP APPLLQQLFG QNQFLFQRGP LQSSYSPSIR  360
AWLDPSAIAI TTTDSIHHHQ YHQAVLPMCS ASVSGIGFAS EVGGFSGFDI PARIQGEIEE  420
HDGGSNKPSS ASSDSRH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G53230.1	1e-73	TCP family protein