PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT51828.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

WRKY

Protein Properties

Length: 607aa MW: 66855.9 Da PI: 6.8271

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT51828.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	93.8	1.2e-29	222	278	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +DgynWrKYGqK v+g+e++rsYY+Ct+++C++kk+vers+ d+++++i+Y g+H+h+ PHT51828.1 222 EDGYNWRKYGQKLVRGNEYTRSYYKCTYPNCQAKKQVERSH-DGHITDIHYIGKHEHP 278 7**************************************.*************8 PP
2	WRKY	97.8	7.3e-31	400	457	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dg +WrKYGqK vkg+++prsYYrC+ agCpvkk+ver+++dpkvv++tYeg+H h+ PHT51828.1 400 NDGQRWRKYGQKIVKGKPNPRSYYRCSVAGCPVKKHVERASHDPKVVITTYEGQHVHN 457 8*******************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 607 aa Download sequence
MGTPKEETTD EVFSENLEQK PEPDPATKSE LKEKRSFEST SADVVSGERQ KRLSPDADKQ 60 ASKNNEEEST YPPTGQEVSR ISQCDKGINV SQSNQEDISL SRVQENPSEN VGQLQVLKSE 120 AGASGSSQLS SLPKDSDAKS CGSESGVRRL SGKASDSSDQ MQSSNTEILL SQSDQQRVNY 180 PIQKREKALD KLQPRRNPDT SVHGLTSDQG VTLLRVPEKP SEDGYNWRKY GQKLVRGNEY 240 TRSYYKCTYP NCQAKKQVER SHDGHITDIH YIGKHEHPET PSGPQMLPEL VLPLQMKQPE 300 IPIISTLEAE GEKSTRPQET CEPSKPSEAP LVLDIVSACG GVKGTPLKRH KSETEVDKDD 360 GSDSKRQKKD IVATVDTPPI KSQSEPRHIV QTVSEVDIIN DGQRWRKYGQ KIVKGKPNPR 420 SYYRCSVAGC PVKKHVERAS HDPKVVITTY EGQHVHNFPT PRDISQISPV PDVITTAIRT 480 DSRIESGENK HVVESKSESG ERKHVGDSRT ELGENKHIEK SKPELGGNKH VGDSKSESGE 540 SKHIGKSKIE SGENKHVGGS RIESGGNKHV EESKPELGGN KHVGESIPES AENKHVGLDM 600 AVHIGAN

Sequence ? help Back to Top

Protein Sequence Length: 607 aa Download sequence

MGTPKEETTD EVFSENLEQK PEPDPATKSE LKEKRSFEST SADVVSGERQ KRLSPDADKQ  60
ASKNNEEEST YPPTGQEVSR ISQCDKGINV SQSNQEDISL SRVQENPSEN VGQLQVLKSE  120
AGASGSSQLS SLPKDSDAKS CGSESGVRRL SGKASDSSDQ MQSSNTEILL SQSDQQRVNY  180
PIQKREKALD KLQPRRNPDT SVHGLTSDQG VTLLRVPEKP SEDGYNWRKY GQKLVRGNEY  240
TRSYYKCTYP NCQAKKQVER SHDGHITDIH YIGKHEHPET PSGPQMLPEL VLPLQMKQPE  300
IPIISTLEAE GEKSTRPQET CEPSKPSEAP LVLDIVSACG GVKGTPLKRH KSETEVDKDD  360
GSDSKRQKKD IVATVDTPPI KSQSEPRHIV QTVSEVDIIN DGQRWRKYGQ KIVKGKPNPR  420
SYYRCSVAGC PVKKHVERAS HDPKVVITTY EGQHVHNFPT PRDISQISPV PDVITTAIRT  480
DSRIESGENK HVVESKSESG ERKHVGDSRT ELGENKHIEK SKPELGGNKH VGDSKSESGE  540
SKHIGKSKIE SGENKHVGGS RIESGGNKHV EESKPELGGN KHVGESIPES AENKHVGLDM  600
AVHIGAN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G26640.1	5e-69	WRKY family protein