PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT51853.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 175aa    MW: 20136.8 Da    PI: 9.6277
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT51853.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF42.39.6e-141559145
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                k+ie +  r+vtfskRr g+ KKA+EL   Cd++  ++ fs++g+
  PHT51853.1 15 KKIEKQDDRYVTFSKRRSGLYKKASELVKECDVDFGMMFFSPKGN 59
                689****************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    
MENKKGKGRQ KIPMKKIEKQ DDRYVTFSKR RSGLYKKASE LVKECDVDFG MMFFSPKGNP  60
FAFFHPTVDA VVSRFQNPDL KLSESTQLVA AQTRNRVNGL QSGLDELDLR EDIAIANKNV  120
YDKVLETTQK SKWESIEQLN AEELTKFEAW LNVTRFNLQN RLNQLENGAS SSFGY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.17e-25M-type_MADS family protein