PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT51873.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 183aa    MW: 21277.3 Da    PI: 9.4442
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT51873.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF382.1e-121852438
                -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEE CS
      SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevavi 38
                e +  r+vtfskRr g+ KKA+EL   Cd+++ v 
  PHT51873.1 18 EKQDERYVTFSKRRSGLYKKASELVMECDVDIGVT 52
                56778**************************9875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    
MENKKGKGRQ KMPMRKKEKQ DERYVTFSKR RSGLYKKASE LVMECDVDIG VTFLFLTGNP  60
FAFFHPTVEA IVSRFFHPTV EAIVSRFQNL DLKLSESTQI VAAQARNRVK ELQSELDELD  120
LREDIAIANK NLYDKVMETR QKGLWESIEQ LNAEELTKFQ AWLNVTRFNL QNRLNQLENG  180
ASS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1517KGKGRQKMPMRKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.11e-20M-type_MADS family protein