PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT51876.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 174aa    MW: 19752.2 Da    PI: 6.7941
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT51876.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF45.41.1e-141563149
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                k+ie +   + +fskRr g+ KKA+EL   Cd++v +iifs+tgk y +
  PHT51876.1 15 KKIEKQDDLYASFSKRRSGLYKKASELVKECDVDVGMIIFSPTGKPYSF 63
                57888889999**********************************9887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    
MENKKGKGRR KIPMKKIEKQ DDLYASFSKR RSGLYKKASE LVKECDVDVG MIIFSPTGKP  60
YSFFHPTVDA IVSCFQNPDL QLSTSAQLVA AHARHRVNEL NSRLEELDTI KKDAVFQNSM  120
YDEVMETGQK SRWESVEEPS AEELTKFEDW LNTVGSDLQN RLNQLESGAS SSRG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.16e-26M-type_MADS family protein