PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT51946.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 176aa    MW: 20264.8 Da    PI: 9.3797
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT51946.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF313.3e-101661247
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                rie + nr+  fskRr g+ KKA+EL    d++  + + s+ +k y
  PHT51946.1 16 RIEKDANRYSAFSKRRSGLYKKASELVRQNDVDLGIFLSSPADKEY 61
                89************************87777777777777666655 PP
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    
MERKKTTGRQ KIPLVRIEKD ANRYSAFSKR RSGLYKKASE LVRQNDVDLG IFLSSPADKE  60
YAFIHPTQNT IIDRFMNSKI DLGEQIVAKN SHNKVNQLND RLNELDKREE VAKERLFSLS  120
QKNKTTEKGR WESIEHLNAD DVMKFQAWLH VGEIMLKDQL AEASSSSQSP SEDADI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.12e-21M-type_MADS family protein