PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT51954.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 176aa    MW: 20299.9 Da    PI: 10.0502
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT51954.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF31.22.8e-101661247
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                rie + nr+ tfskRr g+ KKA+E     d++  + + s+ +k y
  PHT51954.1 16 RIEKNANRYSTFSKRRSGLYKKASEFVRENDVDLGIFLSSPADKAY 61
                89***********************866666666666666666555 PP
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    
MKRMKTTGRR KIPLVRIEKN ANRYSTFSKR RSGLYKKASE FVRENDVDLG IFLSSPADKA  60
YAFVHPTHNA IIDRFMNLKT DLSEQIIAEN SRNKVNQLND RLNELDKREE VGKERLLSLS  120
QRNKTRDKGQ WESIDHLNAD DVMKFQAWLD VGEIMLKDQL AKASSSSQSP SEDADI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.11e-20M-type_MADS family protein