PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT52120.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family MYB_related
Protein Properties Length: 234aa    MW: 25677.6 Da    PI: 9.5496
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT52120.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.62.8e-13126170347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT++E+ +++ + ++lG+g+W+ I+r + ++Rt+ q+ s+ qky
       PHT52120.1 126 PWTEDEHRKFLIGLEKLGKGDWRGISRNFVTTRTPTQVASHAQKY 170
                      7*******************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    
MGRKCSHCGY IGHNTRTCST LKCAISGSSF IGGLKLFGVQ LDIANSSSSS SSSSSFSSHN  60
LKKSLSLDCL SLTNSHIGHS HLSSSLSPSP SINESCEKST TSINNNGYLS DGIGVGCVGE  120
RKKGAPWTED EHRKFLIGLE KLGKGDWRGI SRNFVTTRTP TQVASHAQKY FLRQSSINKK  180
KRRSSLFDMA RINNKFEDFA HNCQEDCQEN SHWIYGSKNS HHNEVPNNKS ISSN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1179183KKKRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.12e-42MYB_related family protein