PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT52134.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB

Protein Properties

Length: 268aa MW: 30648.8 Da PI: 5.7134

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT52134.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	48.3	2.4e-15	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd +l++ ++ G+g +W + +++ g++R++k+c++rw++yl PHT52134.1 14 RGPWSPEEDNILKNFLEKNGTGgNWIALPQKAGLRRCGKSCRLRWLNYL 62 89*********************************************97 PP
2	Myb_DNA-binding	46.4	9e-15	69	111	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +T+eEd +++++ +q G++ W+ Ia+ ++ gRt++++k++w++ PHT52134.1 69 GGFTEEEDNIILNLYNQIGSR-WSVIAANLQ-GRTDNDVKNYWNT 111 569****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 268 aa Download sequence
MGRAPCCDKT KVKRGPWSPE EDNILKNFLE KNGTGGNWIA LPQKAGLRRC GKSCRLRWLN 60 YLRPDIKHGG FTEEEDNIIL NLYNQIGSRW SVIAANLQGR TDNDVKNYWN TKLKKKLLAS 120 QNTNIISTNN NINSSDFNHI NYSRNYYGTL DYSNTFTSHM DPNLTNYSNN CDQYPHLPSL 180 VEIQENDATI QSSESCQILQ KYATLKGSDT YPSTFLQNPN NIGYNYYDDI LENGFDFQEN 240 AIGGANPNSS YYNNILEIDD QLFKGFEN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36890.1	5e-73	MYB family protein