PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT52239.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family C3H
Protein Properties Length: 395aa    MW: 42513.4 Da    PI: 8.0406
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT52239.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH375.6e-12426225
                -S---SGGGGTS--TTTTT-SS-S CS
     zf-CCCH  2 ktelCrffartGtCkyGdrCkFaH 25
                + elCr+f+r G C+yG+rCkF H
  PHT52239.1  4 RKELCRNFMR-GSCQYGERCKFLH 26
                789*******.************* PP
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    
MPPRKELCRN FMRGSCQYGE RCKFLHAAQQ QPKPNPFGFG SQSSNFQSTN VQQTKSNPFG  60
FGVQNNSQPR GFNDFGPKQN QYKPFENKWT RSASTNSSSS RQPDNQPVAP NHTCTDPESC  120
RRQIVEDFNN EKPLWLLTCY GHRKNGPCDI TGDVSYEELR AAAYDDAKRG QSLTSIVERE  180
RSMVNSKVAE FENLLRNPYA SPSTSAPNAQ SPFSGATPSA SSNAQSPFPG ATANASFSDQ  240
SNFPPSASSF SQLGAILNTG ASTPPTSAFG QPSPLGNSFK TSNSSAANPF SFGNPSAAGS  300
LGFGTQVATQ SSQNPFALSN TVGSSGRNPF STSTTSPHFP NPSSEQLPSV MASPLSINLT  360
SATSTPDFSG DNSIWTKEWK IGEIPEEAPP DRYVY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75340.17e-70C3H family protein