PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT52324.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family YABBY
Protein Properties Length: 196aa    MW: 22528.4 Da    PI: 8.6006
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT52324.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY195.72e-60121627170
       YABBY   7 seqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklsene 105
                  eq+Cy+ CnfCn +lavsvP + lf +vtvrCGhCt+l svn+a a+  ++ + +   + ++++++  + +++  ++++++  s+s        ++n+
  PHT52324.1  12 YEQLCYIPCNFCNIVLAVSVPCSNLFDIVTVRCGHCTNLWSVNMAAAAVFQSNSWQ---NHHNHIHQVANYTNSPHDQYKMNFGSSSI-------TNNS 100
                 69****************************************99887765554443...23334444433333333333333332222.......2222 PP

       YABBY 106 deevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                 ++e      v+rPPekrqr Psayn+fikeeiqrika+nPdi+hreafs+aaknWahfP+ihfgl
  PHT52324.1 101 TREER---IVNRPPEKRQRGPSAYNQFIKEEIQRIKANNPDITHREAFSTAAKNWAHFPHIHFGL 162
                 22222...389****************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    
MSSSYIIDST NYEQLCYIPC NFCNIVLAVS VPCSNLFDIV TVRCGHCTNL WSVNMAAAAV  60
FQSNSWQNHH NHIHQVANYT NSPHDQYKMN FGSSSITNNS TREERIVNRP PEKRQRGPSA  120
YNQFIKEEIQ RIKANNPDIT HREAFSTAAK NWAHFPHIHF GLMLETDNQA KLPANENKEK  180
HIMHRAPLPK IKTFTF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.18e-81YABBY family protein