PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT52398.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family ARR-B
Protein Properties Length: 235aa    MW: 26767.8 Da    PI: 5.2115
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT52398.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like76.73e-24178226150
     G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHL 50 
                 kpr++W+ +LH++Fv av+qL G ekA+Pk+il+lm+v+gLt+e+v+SHL
  PHT52398.1 178 KPRVVWSIDLHKKFVTAVNQL-GLEKAVPKRILDLMNVEGLTRENVASHL 226
                 79*******************.***************************9 PP
2Myb_DNA-binding31.44.5e-10180227145
                      TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwq 45 
                      r  W+ ++++++v av+qlG +   +k+I   m+ +g+t++++ s+++
       PHT52398.1 180 RVVWSIDLHKKFVTAVNQLGLEkaVPKRILDLMNvEGLTRENVASHLL 227
                      678*******************************************96 PP
3Response_reg83.56.5e-28261341109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl vdD+p+ ++ll  +l++ +y +v+++++++ al++lke++  +Dl++ D+ mp+mdG++ll+  r e  +lp+i+++a+++++++ + +  Ga 
    PHT52398.1  26 VLAVDDDPICLKLLDGLLRNCQY-QVTTTSQARTALKMLKENKdrFDLVISDVHMPDMDGFKLLELVRLEM-DLPVIMLSANSDSKLVMKGITHGAC 120
                   799********************.***************998889*******************9988865.************************* PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                    +l+Kp+  eel +
    PHT52398.1 121 NYLVKPVRLEELKN 134
                   ***********987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    
MTVEEIRGNM SGESENYDNF SVGMKVLAVD DDPICLKLLD GLLRNCQYQV TTTSQARTAL  60
KMLKENKDRF DLVISDVHMP DMDGFKLLEL VRLEMDLPVI MLSANSDSKL VMKGITHGAC  120
NYLVKPVRLE ELKNIWQHVI RRKEVEPKNW NKSNDQDKAN QGGVEEYERD ENGNDDDKPR  180
VVWSIDLHKK FVTAVNQLGL EKAVPKRILD LMNVEGLTRE NVASHLLALI SLFSL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31920.16e-93ARR-B family protein