PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT52410.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family NAC
Protein Properties Length: 247aa    MW: 28504.3 Da    PI: 4.8783
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT52410.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM45.91.8e-1418158128
         NAM  58 wyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.............kgelvglkktLvfykgrapkgektdWvmheyrl 128
                 +yfF+ +++k+ +g+r +r+t +g+Wka+   k++ ++             ++ ++g+k++Lv++   ++k++kt+W+m eyr+
  PHT52410.1   1 MYFFTLSRRKNDSGTRLERKTPKGVWKASQARKNLSNNekfgdirnkdvtgDDVQIGTKTSLVYW---ESKTTKTSWLMSEYRF 81 
                 5******************************999999777877766666555555**********...566689********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    
MYFFTLSRRK NDSGTRLERK TPKGVWKASQ ARKNLSNNEK FGDIRNKDVT GDDVQIGTKT  60
SLVYWESKTT KTSWLMSEYR FPDQLHHQPV SNEKXKNNDD DHDKGKKIVE YCNDLIPQPN  120
PINFDHDIAT TPTMQPSFHQ TPTQSYTDAA ATTSTRQQSF PQPLCGVMEN VDNDFLQFDD  180
DISCPIPNID FLDFDPFDQS ISQYFDFDNF PCIKDEDIIS HIPISQDDQT PSSDTKDPQL  240
KMKKIKI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.11e-08NAC family protein