PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT52492.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB

Protein Properties

Length: 250aa MW: 28676.8 Da PI: 9.8167

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT52492.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	48.8	1.6e-15	8	55	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+++Ed++l+ +++++G +W++ ++ g+ Rt+k+c++rw +yl PHT52492.1 8 KGAWSPDEDQKLKSYITRYGIWNWNLMPKFAGLSRTGKSCRLRWMNYL 55 79****************99**********************97 PP
2	Myb_DNA-binding	45.4	1.8e-14	61	106	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T eE e ++ ++lG++ W++Ia +++ gRt++++k++++++l PHT52492.1 61 RGPFTIEETETVIKMYQELGNR-WAAIAGRLP-GRTDNEVKNFFHTHL 106 89******************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence
MEVIIIKKGA WSPDEDQKLK SYITRYGIWN WNLMPKFAGL SRTGKSCRLR WMNYLRPEVK 60 RGPFTIEETE TVIKMYQELG NRWAAIAGRL PGRTDNEVKN FFHTHLKKHL GLKIDQNASV 120 KLCKAVRRKR VLEKTKKSDK KNLAQEKPVL YLDISGTSSN KSSFTISPSG SSSSSSIITF 180 DQNQMTDIHV DQPNSIIDDM ENTVMILESN PAISTHHDQS LDSLSIDSLY QFDTSSFWLH 240 LLNDAHRLIF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31180.1	1e-47	MYB family protein