PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT52493.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB

Protein Properties

Length: 233aa MW: 26855.4 Da PI: 9.934

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT52493.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	46.1	1.1e-14	17	64	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd++l ++ ++G +W+ ++ g+ Rt+k+c++rw +yl PHT52493.1 17 KGAWSPEEDQKLRTYIMRYGIWNWRQMPKFAGLSRTGKSCRLRWMNYL 64 79****************99**********************97 PP
2	Myb_DNA-binding	34.9	3.6e-11	70	115	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T eE e ++ ++lG + W++Ia +++ gRt+ +k++++++l PHT52493.1 70 RGPFTMEEVETVIKTYQELGRR-WSAIATKLP-GRTDTGVKNFFHTHL 115 89****************99.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 233 aa Download sequence
MLRVPQQQQQ KGTTIKKGAW SPEEDQKLRT YIMRYGIWNW RQMPKFAGLS RTGKSCRLRW 60 MNYLRPDVKR GPFTMEEVET VIKTYQELGR RWSAIATKLP GRTDTGVKNF FHTHLKKHLG 120 LKNYDAQLKT RKGHKQTQEN EKENSSQGRL ALETINSSSS LSADVCSPCS STITCKQNQM 180 TDQFTNFSLL VDQQVSEGEN TNIQPCFIPG GSTFSTFDQF DMNSFWFDVL GNF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23250.1	2e-48	MYB family protein