PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT52868.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family ERF
Protein Properties Length: 199aa    MW: 22953.8 Da    PI: 5.4453
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT52868.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.73.3e-1963113255
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  y+GVr ++ +g+++AeIrd + ng   r++lg+f++aeeAa a+++a+ +++g
  PHT52868.1  63 NYRGVRKRP-WGKFAAEIRDSTRNG--VRVWLGTFDSAEEAALAYDQAAFAMRG 113
                 59*******.**********44465..*************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    
MDYSWDELLF HHNSLPFNVN DTEDMLLFNF VAEGGSSTTN SCSSSGIKEE EVTSYEEPEK  60
EKNYRGVRKR PWGKFAAEIR DSTRNGVRVW LGTFDSAEEA ALAYDQAAFA MRGSMAILNF  120
PIEIVKETLN EMKCRFDEGC SPVMELKKRH SMRRKTASRS RRIRARKDHE SSKNVVVFED  180
LGAEYLEELL MSSERITNW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1161168RRIRARKD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.14e-55ERF family protein