PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT53010.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 176aa    MW: 20338 Da    PI: 9.8105
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT53010.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF34.52.6e-111663249
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                rie + nr+ tfskRr g+ KKA+EL    d++  + + s+ +k y +
  PHT53010.1 16 RIEKYANRYSTFSKRRSGLYKKASELVRENDVDLGIFLSSPADKAYAF 63
                89************************8777777777777777776665 PP
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    
MERKKTTGRQ KIPLVRIEKY ANRYSTFSKR RSGLYKKASE LVRENDVDLG IFLSSPADKA  60
YAFVHPTQNT IIDRFMNSKI DLGEQIVAKN SRNKVNQLND RLNELDKREE VAKERLFSLS  120
KKNKTREKGR WESIEHLNAD DVMKFQAWLD VGEIMLNDQL VEASSSSQSP SEDADI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.13e-22M-type_MADS family protein