PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT53054.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

Trihelix

Protein Properties

Length: 991aa MW: 111083 Da PI: 7.3705

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT53054.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	27.1	1.1e-08	225	278	22	75
trihelix 22 rrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtses 75 +rgk ++ + +ev++++ ++g++r +k+ kw+n+ ++++k+ e+e++ + e+ PHT53054.1 225 GRGKTRADKDREVAEFLNRHGVNRDAKTAGTKWDNMLGEFRKVYEWERGAEREQ 278 67888999999*************************************975444 PP

Sequence ? help Back to Top
Protein Sequence Length: 991 aa Download sequence
MDENKGDTTK KQPQQHLSNS PADPHDQDSP DNTILQQQQQ QPQSAVSGAP YISSSLYNIP 60 GGAATTSVSF EQQQQFEVVN TKRPRYTASQ WKFIPSSAQQ QHHQQQKTSM LSAESSPISP 120 SAHTIATNPQ TQQAASSSDT ASSPSHSPRP SSASGQEPSK SEGGEQVHQQ FRKGKYVSPV 180 WKPNEMLWLA RAWKIQYQGG GGSSSELGNL EGSPGIAGSG TAAAGRGKTR ADKDREVAEF 240 LNRHGVNRDA KTAGTKWDNM LGEFRKVYEW ERGAEREQIG KSYFRLSPYE RKIHRLPASF 300 DEEVFEELSQ FMGPRMRTPQ TRIGTQPNIS DDIRTPPTVT KSLPPPPPFR EDELPLSGRA 360 KQLVMPSGTE TLIHGTRGGF LGFESPSSSL DIIGGGPSSS TSKELRRIGK IRMIWEESVS 420 LWAEEGEHHR GRVKLQGSSF LNADEITFLD DSMVASTMEA FEDGPMKGFS VDRFPSGVQL 480 KVFGRRKSSS ALAPPGPHER LQLPSSEFTI RSTAPWEFQD PTEYYVGCLR SPPPTLPSLF 540 ELSWHLQQPP PEELRFPLRR DVFKDLPQGK ELFFTTSTEL LDCRGITYDV LTSIMRSNPS 600 LTAATATDRD SYIGLWDDCI NRIISKFCSI EMVFVRKSSS SLAETVQDQW PNVTAFLRNF 660 CLWRGEETDQ LREGQPDPSS FIVEKLFWTY MDLPYVLGYY AIGFIVTFCA LSRSQDRIIR 720 TDLYTVDLST PVERLKALVP CWRIAGLLPL LADKCFHYMS SNGSNFKHLP YTDFERTDLG 780 NGNFVEMTPN TVVRYFSSRR KWLAVKEIYD FLDHRIPHAE FVVRASEKDL ALVFKPRGCK 840 YKPTNCDQLI EALKQVTKAL VALHDLSFMH RDLGWDKVMR RSDRENEWFI TGFDEAVTAP 900 QLYPHGGATT TTGSGRHPPE MGRNYHGVKV DVWGIGQLVK SCGLVGVPKL LRELQNRCLD 960 HNPEQRPTAA DCYRHLLQLQ SSMSAAAAGG Y

Sequence ? help Back to Top

Protein Sequence Length: 991 aa Download sequence

MDENKGDTTK KQPQQHLSNS PADPHDQDSP DNTILQQQQQ QPQSAVSGAP YISSSLYNIP  60
GGAATTSVSF EQQQQFEVVN TKRPRYTASQ WKFIPSSAQQ QHHQQQKTSM LSAESSPISP  120
SAHTIATNPQ TQQAASSSDT ASSPSHSPRP SSASGQEPSK SEGGEQVHQQ FRKGKYVSPV  180
WKPNEMLWLA RAWKIQYQGG GGSSSELGNL EGSPGIAGSG TAAAGRGKTR ADKDREVAEF  240
LNRHGVNRDA KTAGTKWDNM LGEFRKVYEW ERGAEREQIG KSYFRLSPYE RKIHRLPASF  300
DEEVFEELSQ FMGPRMRTPQ TRIGTQPNIS DDIRTPPTVT KSLPPPPPFR EDELPLSGRA  360
KQLVMPSGTE TLIHGTRGGF LGFESPSSSL DIIGGGPSSS TSKELRRIGK IRMIWEESVS  420
LWAEEGEHHR GRVKLQGSSF LNADEITFLD DSMVASTMEA FEDGPMKGFS VDRFPSGVQL  480
KVFGRRKSSS ALAPPGPHER LQLPSSEFTI RSTAPWEFQD PTEYYVGCLR SPPPTLPSLF  540
ELSWHLQQPP PEELRFPLRR DVFKDLPQGK ELFFTTSTEL LDCRGITYDV LTSIMRSNPS  600
LTAATATDRD SYIGLWDDCI NRIISKFCSI EMVFVRKSSS SLAETVQDQW PNVTAFLRNF  660
CLWRGEETDQ LREGQPDPSS FIVEKLFWTY MDLPYVLGYY AIGFIVTFCA LSRSQDRIIR  720
TDLYTVDLST PVERLKALVP CWRIAGLLPL LADKCFHYMS SNGSNFKHLP YTDFERTDLG  780
NGNFVEMTPN TVVRYFSSRR KWLAVKEIYD FLDHRIPHAE FVVRASEKDL ALVFKPRGCK  840
YKPTNCDQLI EALKQVTKAL VALHDLSFMH RDLGWDKVMR RSDRENEWFI TGFDEAVTAP  900
QLYPHGGATT TTGSGRHPPE MGRNYHGVKV DVWGIGQLVK SCGLVGVPKL LRELQNRCLD  960
HNPEQRPTAA DCYRHLLQLQ SSMSAAAAGG Y

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	2e-08	Trihelix family protein