PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT53063.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 49aa    MW: 5681.73 Da    PI: 10.5705
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT53063.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF79.72.1e-25949141
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41
                krien++ rqvtf kR+ng++KKA+ELSvLCdaeva iifs
  PHT53063.1  9 KRIENTTSRQVTFNKRKNGLMKKAYELSVLCDAEVAFIIFS 49
                79*************************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 49 aa     Download sequence    
MVRGKVEMKR IENTTSRQVT FNKRKNGLMK KAYELSVLCD AEVAFIIFS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11880.14e-26MIKC_MADS family protein