PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT53105.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family HD-ZIP
Protein Properties Length: 819aa    MW: 88910.7 Da    PI: 6.3332
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT53105.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.76.2e-21120175156
                 TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 ++k +++t++q++eLe++F++n++p++++r eL k+l+L++rqVk+WFqNrR+++k
  PHT53105.1 120 KKKYHRHTPYQIQELEACFKENPHPDEKARLELGKRLSLETRQVKFWFQNRRTQMK 175
                 79999************************************************999 PP
2START167.49.7e-533295531206
                 HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S.......EEEEEE CS
       START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla.......kaetle 83 
                 ela +a++elvk+a+ + p+W++s     e++n +e+ ++f++  +     ++ ea +a+g v  ++  lve+l+d++ qW  t+        ++ ++ 
  PHT53105.1 329 ELAFAAMNELVKLAEISGPLWFRSLdgngEELNLEEYARSFPPCIGmkpanFTAEATKATGTVMINSLALVETLMDTS-QWVDTFSsivgrtsSMNLIS 426
                 57899**************************************9999*******************************.***********888888888 PP

                 EECTT...EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXH CS
       START  84 vissg...galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlph 178
                   s g   g lql++ae+q+ s lvp R + f+R+++q+ +g+w++vdvSvd  q+ ++  +   +++lpSg++++++sng+skv+w+eh++++++++h
  PHT53105.1 427 SSSGGsrnGNLQLIQAEFQVVSALVPvRQVKFLRFCKQHAEGVWAVVDVSVDAIQEGSQPREAGNCRRLPSGCIVQDLSNGYSKVIWIEHMEYDESTIH 525
                 87777****************************************************998899999********************************* PP

                 HHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
       START 179 wllrslvksglaegaktwvatlqrqcek 206
                  ++r ++ksgl +ga++w a+lqrqce+
  PHT53105.1 526 HYYRAFIKSGLGFGAQRWIAALQRQCEC 553
                 **************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 819 aa     Download sequence    
MSFGGFIGSS SGGDGGGGGG SGVSRLVGDS PYEAMPTATV AQSQLITSSL PQSIFNSSPL  60
SLALKPKMEG ASDMSLLAEN FGAVAMGRSD ENDSRSPSDH LDGGGSGDDM EAHVGSSSRK  120
KKYHRHTPYQ IQELEACFKE NPHPDEKARL ELGKRLSLET RQVKFWFQNR RTQMKTQLER  180
HENSMLKQEN DKLRLENLAM KEAMRGPTCH QCGGQAILGE IHMEEHHLKI ENARLRDEYN  240
RICLMANKVL GRPLSSFPSP MPAGMGNFGL ELAVGRNGFG AMNSVDAALP MGLDFGNGIS  300
SATIPVISPR PIPNMTGIDV SFDKTVLMEL AFAAMNELVK LAEISGPLWF RSLDGNGEEL  360
NLEEYARSFP PCIGMKPANF TAEATKATGT VMINSLALVE TLMDTSQWVD TFSSIVGRTS  420
SMNLISSSSG GSRNGNLQLI QAEFQVVSAL VPVRQVKFLR FCKQHAEGVW AVVDVSVDAI  480
QEGSQPREAG NCRRLPSGCI VQDLSNGYSK VIWIEHMEYD ESTIHHYYRA FIKSGLGFGA  540
QRWIAALQRQ CECLAIIMSS TVSSGDNAVV APSGRRSIAM LARRVTCNFC GGVCGTFYKW  600
EPIQSGSGEE TKLMMRKSVG ELGEPSGVML SATRTIWLPI THQRLFDFLR NAQTRRQWDV  660
LFHGDAMHEI VHIAKGQDLG NSISLYRTNV TGSDGNQSSM LYLQDSCTDV SGSIVSYAAV  720
DTAQMNVVMS GGDSSCVTFL PSGFAIVPDC FGNSDGVTNN GMLEKEDNGG RNNGSFLTVG  780
YQILVNNLPG GNLTMESVNT INSFVSRTLD GIKTIFRCN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.10.0HD-ZIP family protein