PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT53268.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family GRAS
Protein Properties Length: 662aa    MW: 72872.1 Da    PI: 7.3163
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT53268.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS344.51.7e-1052956623374
        GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
                 + ++e+A+a+s+g++  a ++L+rls+ a+ +g+p qRl+ay++ AL++r++     +    p+ e    +s e++  ++ ++evsP++k+++++aN +
  PHT53268.1 295 QSIIEAATAISEGKTDVAVEILTRLSQVANVRGSPDQRLTAYMVTALRSRVNP----TDYPPPVLEL---HSREHTDTTQNLYEVSPCFKLGFMAANLT 386
                 6789************************************************9....2222333344...48889999999****************** PP

        GRAS 102 Ileavege..ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197
                 Ileav+ +  +++H+iDfdi+qG+Q+  Ll aLa+++ ++p+ l+iT++ +++ g  e+l+++g  L+ +A+++gv + fn+ +a ++++l+ e+L ++
  PHT53268.1 387 ILEAVADHpfNKLHVIDFDIGQGGQYFHLLYALAAKKsDKPAVLKITAFTEQAGGVDERLNSIGVELKVVANRVGVCLFFNI-TACKITELNREKLGIE 484
                 *******999************************77736666*********8888**************************9.899************* PP

        GRAS 198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivn 296
                 p+EalaVn++++l+rl+desv++e+ rde+L+ vk lsPkvv+vveqe++ n+++Fl+r+ e + +y alfdsl+a+++r+++er  +E+  l+r+  n
  PHT53268.1 485 PDEALAVNFAFKLYRLPDESVTTENLRDELLRRVKALSPKVVTVVEQEMNGNTAPFLARVNEVCGHYGALFDSLDATVSRDNSERLRIEEG-LSRKMGN 582
                 *******************************************************************************************.******* PP

        GRAS 297 vvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  vaceg++r+er+e ++kWr+rl++aGF+p p+s+ +a++ ++ l+     + g++v+e++g +++gW++r L+++SaWr
  PHT53268.1 583 SVACEGRDRVERCEVFGKWRARLGMAGFGPRPMSQLVANSLRAKLNSGTrgNPGFTVNEQNGGICFGWMGRILTVASAWR 662
                 ***************************************999999875546899*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 662 aa     Download sequence    
MSSPFSGDFY GAAGGINTGR STMNNNTNSN NSLRPLYSSP LSGILPDPVT QIVHHGRPSL  60
MGKRSLAEFQ QQQQLHFLQQ QQQQNQQQQQ QMMLLQQQQQ QQQGLGFYMR NVKPRSYQQA  120
SPISPLSPVD FSVAAAAASS ISSEFSSISS NSNASTRHPL PVMLQLRSQQ HGFLTPPIHN  180
YSTGVSSLNP VHNRASMGVQ QQLLSQESDK KMMNCLQELE KQLLDDNDVE EGDAVSVVTN  240
NEWSETIQNL ITPCQNQNQN QNQNQIQKLA SLSPSSSTSS CASSTESPPI SCPKQSIIEA  300
ATAISEGKTD VAVEILTRLS QVANVRGSPD QRLTAYMVTA LRSRVNPTDY PPPVLELHSR  360
EHTDTTQNLY EVSPCFKLGF MAANLTILEA VADHPFNKLH VIDFDIGQGG QYFHLLYALA  420
AKKSDKPAVL KITAFTEQAG GVDERLNSIG VELKVVANRV GVCLFFNITA CKITELNREK  480
LGIEPDEALA VNFAFKLYRL PDESVTTENL RDELLRRVKA LSPKVVTVVE QEMNGNTAPF  540
LARVNEVCGH YGALFDSLDA TVSRDNSERL RIEEGLSRKM GNSVACEGRD RVERCEVFGK  600
WRARLGMAGF GPRPMSQLVA NSLRAKLNSG TRGNPGFTVN EQNGGICFGW MGRILTVASA  660
WR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.11e-149GRAS family protein