PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT53335.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family Nin-like
Protein Properties Length: 260aa    MW: 30438.8 Da    PI: 8.1251
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT53335.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK82.83.4e-26149198352
      RWP-RK   3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                 ++++l+++++yF+lpi++AAk+L v+lTvLK++CR+++++RWPhRkiksl
  PHT53335.1 149 DRLELDEIQRYFHLPITEAAKKLRVGLTVLKKRCRELNVMRWPHRKIKSL 198
                 7899********************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    
MNMNSQALNV LKIENQSDHF DWLFSEEYSS SLGTWQQDSR LLSNGSLFNL DLDSFQFPID  60
FQNNHLPIFG FGEFEEMCQD LGSFDLKLLQ SPTHVDNNNI PIDVNAKVMP LNVTHDTLGE  120
YQVTNRAFYE LNGGPKKRSN HTGRHKKSDR LELDEIQRYF HLPITEAAKK LRVGLTVLKK  180
RCRELNVMRW PHRKIKSLQT LIHSVKEMGL TSEVEMLEEH QRMVEQVPEM ELTERTKKLR  240
QACFKANYKK RRASMMTAFF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53040.18e-43Nin-like family protein