PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT53491.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family HD-ZIP
Protein Properties Length: 722aa    MW: 79615.1 Da    PI: 6.6489
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT53491.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox611.8e-192984156
                TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                +++ +++t++q+++Le+ F+++++p++++r +L++ lgL  rq+k+WFqNrR+++k
  PHT53491.1 29 KKRYHRHTANQIQRLEDIFKECPHPDEKTRLQLSRDLGLAPRQIKFWFQNRRTQMK 84
                678899***********************************************998 PP
2START183.98.7e-582274542206
                 HHHHHHHHHHHHHHHC-TT-EEEE.....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEE CS
       START   2 laeeaaqelvkkalaeepgWvkss.....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevi 85 
                 +a  a++el+++++ +ep+W+kss     + +n d + + f+++++       ++ea+r+sgvv+m+   lv  ++d + +W+e ++    ka tlevi
  PHT53491.1 227 VAGNAMEELIRLVQTNEPLWMKSSsidgrDVLNFDNYDRVFPRTNShlknpnVRIEASRDSGVVIMNGLALVDVFMDAN-KWQEFFPtivsKARTLEVI 324
                 67899*******************99999888888888888888889999999**************************.******************* PP

                 CTT.......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSX CS
       START  86 ssg.......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrl 176
                 ssg       ++lqlm+ elq+lsplvp R f+f+R+++q ++g+w+ivdvS d  q+++ ss + ++++lpSg+li++++ng+skv wvehv+++++ 
  PHT53491.1 325 SSGvmgsrtsSTLQLMYEELQVLSPLVPtRQFYFLRFCQQIEQGTWAIVDVSYDIAQENQYSSTSCKVHRLPSGCLIQDMPNGYSKVAWVEHVEVEEKG 423
                 ***********************************************************99**********************************9875 PP

                 X.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
       START 177 p.hwllrslvksglaegaktwvatlqrqcek 206
                   h l+r l++sgla+ga +wv tlqr ce+
  PHT53491.1 424 LiHRLYRDLIHSGLAFGAERWVGTLQRVCER 454
                 55***************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 722 aa     Download sequence    
MEYGGTGGSG GGGGGGADPN DASDPQRRKK RYHRHTANQI QRLEDIFKEC PHPDEKTRLQ  60
LSRDLGLAPR QIKFWFQNRR TQMKAQHERA DNCALRTEND KIRCENIAIR EALKNVICPS  120
CGGPPVNEDS YFDEQKLRIE NMQLKEELDK VSSIAAKYIG RPISQLPPVQ PIHLSSLDLS  180
MSSFIGHGPS SLDLDLDLLP GSSSAMPSLA YATLNLSDMD KSLMADVAGN AMEELIRLVQ  240
TNEPLWMKSS SIDGRDVLNF DNYDRVFPRT NSHLKNPNVR IEASRDSGVV IMNGLALVDV  300
FMDANKWQEF FPTIVSKART LEVISSGVMG SRTSSTLQLM YEELQVLSPL VPTRQFYFLR  360
FCQQIEQGTW AIVDVSYDIA QENQYSSTSC KVHRLPSGCL IQDMPNGYSK VAWVEHVEVE  420
EKGLIHRLYR DLIHSGLAFG AERWVGTLQR VCERYACLMV NSNPSHDLGG VIPSPQGKRS  480
MMKLAQRMVR NFCTSVNPSN GHQWSTISGL NEFEVRATLQ KSTDPGQPNG VVISAATTIW  540
LPIPPQHVFN FFRDERTRPQ WDVLSNQNPV QEVAHIANGS HSGNCISVLR AYNTSQNNML  600
ILQESCIDSS GALVVYSPVD VPVINIAMSG EDPTYIPLLP SGFTISPDGR QLNAEAASCS  660
SSSNATTIGG GRSGGSLITV VFQILVSSLP SAKMSPESVN TVNNLIGSTV HQIKTALNCT  720
TS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.10.0HD-ZIP family protein