PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT53498.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 157aa    MW: 17953.4 Da    PI: 5.162
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT53498.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF69.82.4e-222271150
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                ++i+nk   qv fskRr  ++KKA+ELS+LC+++vavi+ s+ gkly + 
  PHT53498.1 22 EKISNKKSLQVAFSKRRGSLFKKASELSTLCGVQVAVIVESPAGKLYSFG 71
                579********************************************995 PP
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    
MENKEEETSK KKTLGRRKIP IEKISNKKSL QVAFSKRRGS LFKKASELST LCGVQVAVIV  60
ESPAGKLYSF GSPSVDSVID RFEKAREDGL NSCSEAHEEE KGVMEKSNWW WEDVFLENLG  120
LEELEERMSD MQVLKNNLLK RIQDHDDLVM ADSFLNL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-25M-type_MADS family protein