PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT53648.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family bHLH
Protein Properties Length: 340aa    MW: 37832.2 Da    PI: 6.7829
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT53648.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.43e-09174221455
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  PHT53648.1 174 SHSLAERVRREKISERMKMLQSLVPGC----DKVTGKALMLDEIINYVQSLQ 221
                 8*************************9....555*****************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    
MSTFSSYQLQ QHNTPSLLDS VFLPSSPLKM SGFFEEPNNS CVVQNCFSQF YQPEFPTNNV  60
IVNENSYCLD QNTNVTNKSS SSISLDMDSS SVTDKIESGN NKPNVTSPMD KKRKSREGSS  120
SMTSANSKNV TQGDNGKKKK SNSKLVAKDE KKANEEAPTG YIHVRARRGQ ATDSHSLAER  180
VRREKISERM KMLQSLVPGC DKVTGKALML DEIINYVQSL QNQVEFLSMK LASLNPMYYD  240
FGMDLDALMV RPDDQNLSGL ETQLPNIQQA STTTSQAAEV IPNTNSGYPF LDNSASLMFQ  300
QAHFPNSIHQ GIGQLLWGAE DQRQKIINQS GFSNNFCSFH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111140KKRKSREGSSSMTSANSKNVTQGDNGKKKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.28e-60bHLH family protein