PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT53752.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

C3H

Protein Properties

Length: 502aa MW: 56112.2 Da PI: 4.9125

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT53752.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	38.6	1.8e-12	168	189	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C+++++tG Ck+G++CkF+H+ PHT53752.1 168 DCPYYMKTGMCKFGSNCKFNHP 189 7********************8 PP
2	zf-CCCH	32.4	1.6e-10	214	238	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + +C++++ +G CkyG CkF+H++ PHT53752.1 214 QIECKYYLTSGGCKYGKACKFIHSR 238 568********************95 PP
3	zf-CCCH	41.5	2.2e-13	258	283	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++++C++++rtG CkyG++C+F+H+ PHT53752.1 258 PGERECPYYMRTGSCKYGSNCRFHHP 283 5789*********************9 PP
4	zf-CCCH	28.5	2.6e-09	395	421	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++f ++G Cky ++CkF+H++ PHT53752.1 395 PGQPECSYFIKFGDCKYRSNCKFHHPR 421 5789*********************96 PP
5	zf-CCCH	36.2	1e-11	443	467	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + C+f++r+G+Ck+G+ CkF H++ PHT53752.1 443 QTVCSFYSRYGICKFGPACKFDHPE 467 678********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 502 aa Download sequence
MEEPIQQHQN QNQSEQLGLG LGLESRDSGT SSLPSDPNSQ NPNQNQPKSD DHDDDEMAMQ 60 VICEELQNLI LSRALDEEKG NEDRGESGRI EVENVEGNDD EGWGYEESGE FGYDQYDDED 120 GDGNRSGNED DGGNENGYEG DLKEVGGFNG NRINTRKFTY PLRPDAQDCP YYMKTGMCKF 180 GSNCKFNHPS RGKFQQGTKE KGKQREESQE RPGQIECKYY LTSGGCKYGK ACKFIHSREK 240 GSISPIVEFN FLGLPLRPGE RECPYYMRTG SCKYGSNCRF HHPDPITVAG ADPSSGYNNA 300 GAFPVQASSH SAESSWSPPR SLNDTASYAP MVYPPSQGIP SPNTEWNGYQ APVYPTSEKR 360 LPTPPAFSMN NPTTKTTFYP RSQQPLLIEE YPERPGQPEC SYFIKFGDCK YRSNCKFHHP 420 RSRISKANSS TLNDKGLPLR PDQTVCSFYS RYGICKFGPA CKFDHPENYV GGSAPSAESG 480 FDQHQQSQMS LGWQGRQLEV DH

Sequence ? help Back to Top

Protein Sequence Length: 502 aa Download sequence

MEEPIQQHQN QNQSEQLGLG LGLESRDSGT SSLPSDPNSQ NPNQNQPKSD DHDDDEMAMQ  60
VICEELQNLI LSRALDEEKG NEDRGESGRI EVENVEGNDD EGWGYEESGE FGYDQYDDED  120
GDGNRSGNED DGGNENGYEG DLKEVGGFNG NRINTRKFTY PLRPDAQDCP YYMKTGMCKF  180
GSNCKFNHPS RGKFQQGTKE KGKQREESQE RPGQIECKYY LTSGGCKYGK ACKFIHSREK  240
GSISPIVEFN FLGLPLRPGE RECPYYMRTG SCKYGSNCRF HHPDPITVAG ADPSSGYNNA  300
GAFPVQASSH SAESSWSPPR SLNDTASYAP MVYPPSQGIP SPNTEWNGYQ APVYPTSEKR  360
LPTPPAFSMN NPTTKTTFYP RSQQPLLIEE YPERPGQPEC SYFIKFGDCK YRSNCKFHHP  420
RSRISKANSS TLNDKGLPLR PDQTVCSFYS RYGICKFGPA CKFDHPENYV GGSAPSAESG  480
FDQHQQSQMS LGWQGRQLEV DH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63260.1	1e-112	C3H family protein