PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT53809.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 215aa    MW: 24407.8 Da    PI: 9.1706
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT53809.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF65.84.5e-212877149
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-.TTSEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifs.stgklyey 49
                k+i n+  r+vtfskRr g++KKA+EL++LC+ae+a+i+ s ++++l+++
  PHT53809.1 28 KPIANQNSRHVTFSKRRLGVFKKASELCILCGAEIAIIVQSlKRQRLFTF 77
                689*************************************9567889888 PP
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    
MNANNTDTVD SSAVPVKKTQ GRRKIVIKPI ANQNSRHVTF SKRRLGVFKK ASELCILCGA  60
EIAIIVQSLK RQRLFTFGHP SVDVVIDRYL TGKSSSVNNH RFNFVQQNNE YYSQICRELD  120
AEKKNKEIID ESKMVNGNNN GFWWNESIDN MGIEELDKFV DALEELKKRV NMRVDVLSMI  180
KGSSSLPSTS TMNQAIDYCA SIVPFDFNYP GNAQF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-35M-type_MADS family protein