PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT53836.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family MYB_related
Protein Properties Length: 310aa    MW: 35222.4 Da    PI: 8.4543
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT53836.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.75.6e-18173219148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT eEd +l+++v+++G + W+ Ia+++  gR +kqc++rw+++l
       PHT53836.1 173 KGQWTIEEDRILINLVEKFGDRKWSEIAKMLK-GRIGKQCRERWNNHL 219
                      799****************************9.*************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    
MDFDPSSKQD VFCTIPTDYL HDFHHLDLTF SLAGGPLTFN TNPDHMIEMD SGYEHPLFDP  60
LSNHGDNFSS MGQDFNFGYE FKPFEQNGNA SGSTLFMKNF ESSTDMKSIN FNVVRDESSC  120
VTSTIENNGT NNVYNDKEIG GRKNKKLIKS NDKKSSSMRK SGRGTRKKSK SAKGQWTIEE  180
DRILINLVEK FGDRKWSEIA KMLKGRIGKQ CRERWNNHLR PDIKMTKRRK SQISAVTTTP  240
GGNFTSILSD EPSETSYNFG ESQKLMNSPT STKVNTFRVD AIDLDEKFAM MEQTIEALKK  300
SVDKKDHQIA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.14e-23MYB family protein