PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT53886.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB_related

Protein Properties

Length: 657aa MW: 76008.2 Da PI: 8.7899

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT53886.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22.7	2.3e-07	451	490	3	45
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +WT+eE e+ + k++G++ Wk a ++g + + ++k+ w+ PHT53886.1 451 KWTEEEYEIVRKFQKEHGNN-WKVLADELG--KHRFHVKDTWR 490 8***************99.******9..56777887776 PP

Sequence ? help Back to Top
Protein Sequence Length: 657 aa Download sequence
MDQGDEKEDM LRKLEKKSKK SNKNAATSGL GGESDGCEVK KKKKRKGGEH PGKCNKDNDE 60 DVVKYVERKK NNKLKKSCLN EPLDFKISAP ASASEMRDSE KVVETLGEIS SGDVVDEIRR 120 KKKSKKNIKT TNVVGVANTD IEAKTDDCDL KRKKEKKHGK HSEKFNEDSD EVALRIVEGK 180 KSRKLKKSRV AEQEKMHDTE DVQEDIVAEV DEGDISSPIK IEEKNRTDNG NIKKRKKVKS 240 GHSSEDPTHE IEEENRTDNG NIKKKKKVKS GHSSEDPAHE IEEENRTDNG NIKKKKKVKS 300 GHSSEDPTHE IEEENRKDNG NIKKKKKVKS GHSSEDPTHE KSAKKVRFSG HVQIFPSSDD 360 TSDEKHEIED ENLLRGKRFS KLEDEIVKEA VHKYVDFHNL GEEGLEKILN SRSYPEIKGC 420 WKEIGSAIPY RPYTAVYYRA QILFRRSESR KWTEEEYEIV RKFQKEHGNN WKVLADELGK 480 HRFHVKDTWR RIRRPNQNKG QWTQEEYQSL FDLVNTDLRL RLSEEKRSKY GMLRDNIAWT 540 AISDKLSTRA EANCCLKWYD QLTSPMVAKG EWADVDDYRL VDALFELDAS CIEDVDWDNL 600 LDHRPGEICR KRWNQMVLHI GKLKNSSFAE QVEVLAKRYR PDFAEVREAW DNKPVVP

Sequence ? help Back to Top

Protein Sequence Length: 657 aa Download sequence

MDQGDEKEDM LRKLEKKSKK SNKNAATSGL GGESDGCEVK KKKKRKGGEH PGKCNKDNDE  60
DVVKYVERKK NNKLKKSCLN EPLDFKISAP ASASEMRDSE KVVETLGEIS SGDVVDEIRR  120
KKKSKKNIKT TNVVGVANTD IEAKTDDCDL KRKKEKKHGK HSEKFNEDSD EVALRIVEGK  180
KSRKLKKSRV AEQEKMHDTE DVQEDIVAEV DEGDISSPIK IEEKNRTDNG NIKKRKKVKS  240
GHSSEDPTHE IEEENRTDNG NIKKKKKVKS GHSSEDPAHE IEEENRTDNG NIKKKKKVKS  300
GHSSEDPTHE IEEENRKDNG NIKKKKKVKS GHSSEDPTHE KSAKKVRFSG HVQIFPSSDD  360
TSDEKHEIED ENLLRGKRFS KLEDEIVKEA VHKYVDFHNL GEEGLEKILN SRSYPEIKGC  420
WKEIGSAIPY RPYTAVYYRA QILFRRSESR KWTEEEYEIV RKFQKEHGNN WKVLADELGK  480
HRFHVKDTWR RIRRPNQNKG QWTQEEYQSL FDLVNTDLRL RLSEEKRSKY GMLRDNIAWT  540
AISDKLSTRA EANCCLKWYD QLTSPMVAKG EWADVDDYRL VDALFELDAS CIEDVDWDNL  600
LDHRPGEICR KRWNQMVLHI GKLKNSSFAE QVEVLAKRYR PDFAEVREAW DNKPVVP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	40	46	KKKKKRK
2	40	73	KKKKKRKGGEHPGKCNKDNDEDVVKYVERKKNNK
3	41	46	KKKKRK
4	119	152	KKKKKRKGGEHPGKCNKDNDEDVVKYVERKKNNK
5	120	153	KKKKKRKGGEHPGKCNKDNDEDVVKYVERKKNNK
6	122	155	KKKKKRKGGEHPGKCNKDNDEDVVKYVERKKNNK
7	151	184	KKKKKRKGGEHPGKCNKDNDEDVVKYVERKKNNK
8	233	266	KKKKKRKGGEHPGKCNKDNDEDVVKYVERKKNNK
9	233	237	KKRKK
10	234	267	KKKKKRKGGEHPGKCNKDNDEDVVKYVERKKNNK
11	263	296	KKKKKRKGGEHPGKCNKDNDEDVVKYVERKKNNK
12	264	297	KKKKKRKGGEHPGKCNKDNDEDVVKYVERKKNNK
13	293	326	KKKKKRKGGEHPGKCNKDNDEDVVKYVERKKNNK
14	294	327	KKKKKRKGGEHPGKCNKDNDEDVVKYVERKKNNK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41020.1	1e-135	MYB_related family protein