PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT53930.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB

Protein Properties

Length: 336aa MW: 38433.6 Da PI: 6.1343

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT53930.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.1	6.2e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l ++++ +G g+W+++++ g+ R++k+c++rw +yl PHT53930.1 14 KGLWSPEEDEKLSNYITNFGIGSWSSVPKQAGLQRCGKSCRLRWINYL 61 678*******************************************97 PP
2	Myb_DNA-binding	44.9	2.6e-14	67	110	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg ++++E+++++ +++ lG++ W+ Ia+ ++ gRt++++k++w++ PHT53930.1 67 RGMFSQDEEDRILGLHQVLGNR-WAQIAAQLP-GRTDNEIKNYWNS 110 788*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 336 aa Download sequence
MGRHSCGVKQ KLRKGLWSPE EDEKLSNYIT NFGIGSWSSV PKQAGLQRCG KSCRLRWINY 60 LRPDLKRGMF SQDEEDRILG LHQVLGNRWA QIAAQLPGRT DNEIKNYWNS SLKKKLMKQG 120 IDPNTHKPLR ENQVIKDEEN CTNKTSMFEV PFLNEMDQPF TQLASSKDQY VSKQVFDLLF 180 SHEFQSNENN SQTLAQYHDH HHQSEYEENP NYVFCSASSV TKLEHGQMTD TDFASSSTSR 240 MSSSNSSNMC SNQNTAGIRI NAMSENSEAL SWDVENKMES LFQYPYIGIK NEELRSSPSQ 300 ERELHGHSSG DFMSNYPLSS LTEELSGANL DVFQQI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G01680.3	9e-76	MYB family protein