PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT53992.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

GRAS

Protein Properties

Length: 582aa MW: 65172.1 Da PI: 5.5702

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT53992.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	44.1	3.4e-14	492	562	1	71
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetse 71 l++lL++c +av+++d + ++ lL++++e++sp g+ +qRla++f+ +L+ la+ +s++ykal ++t + PHT53992.1 492 LRSLLISCKHAVTADDSRSTNDLLKQMREHSSPFGNGNQRLAHCFADGLEVALAGIGSQIYKALVNKRTVT 562 689*************************************************************7766643 PP

Sequence ? help Back to Top
Protein Sequence Length: 582 aa Download sequence
MDLNDRRSQA RARARARARV QFQAKWVDGT GIDTGDVAGV DAGVIESAYR SRVRARARAL 60 YRARSQARAR FQAKWVDVTG IHTGDVVGVG ENPYKWNELR QMIVNKITET LARFLPESNL 120 GVQEVMKIAA RFQNPRTNYL HPNASSSGQN VHGPEMTIGA TSYKTTFGPE ENDEEQAVEG 180 DDGDVSKEDV EEEVVVKKEQ NYVVGHEENV RVGENEISCG LIDGAKLDER LVHVEERLEK 240 MEAHSEKMVT LENKSQNPMT NYVLPSAASS CQNVHGTEMA MEATSYKINS GPEDDEEQAA 300 EEEAEEDAGD MSKEDFVEEV VVKKEQNYVV GHEVNVTVGE NEISCGLSVG AKLDERLVQV 360 EERLEKMETL LVDINEKLNC LVKMQDAKGS MDLRRPAKYM SSLWIGNGRS KRKHRVAELI 420 RQSCKHRRLG RGDKAVVHPV ALHDDCNQLY DLENGDEALE AYRQNLWNAK SKTTVQISKG 480 SKVWRRMEII DLRSLLISCK HAVTADDSRS TNDLLKQMRE HSSPFGNGNQ RLAHCFADGL 540 EVALAGIGSQ IYKALVNKRT VTSGTSIWHD KLLLYCLELC DV

Sequence ? help Back to Top

Protein Sequence Length: 582 aa Download sequence

MDLNDRRSQA RARARARARV QFQAKWVDGT GIDTGDVAGV DAGVIESAYR SRVRARARAL  60
YRARSQARAR FQAKWVDVTG IHTGDVVGVG ENPYKWNELR QMIVNKITET LARFLPESNL  120
GVQEVMKIAA RFQNPRTNYL HPNASSSGQN VHGPEMTIGA TSYKTTFGPE ENDEEQAVEG  180
DDGDVSKEDV EEEVVVKKEQ NYVVGHEENV RVGENEISCG LIDGAKLDER LVHVEERLEK  240
MEAHSEKMVT LENKSQNPMT NYVLPSAASS CQNVHGTEMA MEATSYKINS GPEDDEEQAA  300
EEEAEEDAGD MSKEDFVEEV VVKKEQNYVV GHEVNVTVGE NEISCGLSVG AKLDERLVQV  360
EERLEKMETL LVDINEKLNC LVKMQDAKGS MDLRRPAKYM SSLWIGNGRS KRKHRVAELI  420
RQSCKHRRLG RGDKAVVHPV ALHDDCNQLY DLENGDEALE AYRQNLWNAK SKTTVQISKG  480
SKVWRRMEII DLRSLLISCK HAVTADDSRS TNDLLKQMRE HSSPFGNGNQ RLAHCFADGL  540
EVALAGIGSQ IYKALVNKRT VTSGTSIWHD KLLLYCLELC DV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	1e-26	GRAS family protein