PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT54088.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MYB

Protein Properties

Length: 271aa MW: 29609 Da PI: 8.9907

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT54088.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	29.5	1.8e-09	11	53	4	44
S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 W+ e d + +a + ++ + +W++Ia+ + g+tl+++k+++ PHT54088.1 11 WSREQDIAFENALATYPEDstdRWEKIAADVS-GKTLEEVKNHY 53 ******************************.********9 PP
2	Myb_DNA-binding	44.6	3.3e-14	121	165	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT++E+ l++ + +++G+g+W++I+r + +Rt+ q+ s+ qky PHT54088.1 121 AWTEDEHRLFLLGLEKYGKGDWRSISRNFVVTRTPTQVASHAQKY 165 7*******************************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 271 aa Download sequence
MTLAKARSSI WSREQDIAFE NALATYPEDS TDRWEKIAAD VSGKTLEEVK NHYEILVDDV 60 SRIESGCVPL PCYNSSVDGS SSHGGGERTG KKSGISGRLN GETNDGGKAL RLEQDRRKGV 120 AWTEDEHRLF LLGLEKYGKG DWRSISRNFV VTRTPTQVAS HAQKYFIRLN SMNKDRRRTS 180 IHDITSVNNG DVPVPQVPIT GQTIGAGVAG SSGKSNKHSQ TAPIAPVGVG IYGTTTIRQP 240 VIGQLVNVVG QRQIQDLDIM NSSLGFYYSQ S

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08520.1	1e-101	MYB family protein