PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT54428.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

NF-YB

Protein Properties

Length: 524aa MW: 59014.2 Da PI: 6.8457

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT54428.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	165.7	6.2e-52	351	445	1	95
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 vreqdrf+Pianv+rim+k+lP +akis+d+ket+qecvsefisfvt+ea+d+cqre+rkti+++d+lwa+++lGf+dy+epl+++l++yre+++ PHT54428.1 351 VREQDRFMPIANVIRIMRKILPPHAKISDDSKETIQECVSEFISFVTGEANDRCQREQRKTITAEDVLWAMSKLGFDDYIEPLTLHLHRYRECDS 445 59******************************************************************************************875 PP

Sequence ? help Back to Top
Protein Sequence Length: 524 aa Download sequence
MISVGKIKQY TNVLERPLSK GKQEVSLSAF AFLFSELVQY NQTQVDNITE LERRLEDAGY 60 AVGARILELL CHREKGNRRE TRLLGILSFV HSTVWKVADS LEKGTEHEDE YMISEKELLV 120 NRFISIPKDM GAFNCGAFVA GIVRGVLENA GFPAVVTAHF VPVEGQHRPR TTILIKFAEE 180 ACAPLLAHRP PLRVVAPRMD RSSLVTTTSL VTVPLLGSSH HSESWLNAWI DPRWLRLCQV 240 GYGWHPSWVQ ACAPLLAHRP PLRVVAPRMD RSSLVTTTSL VTVPLLGSSH HSESWLNAWI 300 DPRWLRLCQV DGKVTEMNMN LSAQLNHAIP PTNHNNNNNY ASVTDDSECT VREQDRFMPI 360 ANVIRIMRKI LPPHAKISDD SKETIQECVS EFISFVTGEA NDRCQREQRK TITAEDVLWA 420 MSKLGFDDYI EPLTLHLHRY RECDSGDRGS LRGEPLMLMK PRGVVVDPAA STSINANMIP 480 INYPLPPNFT MAHHHGYFTY AHMSHDNVAS NSQANHDEAN NVEE

Sequence ? help Back to Top

Protein Sequence Length: 524 aa Download sequence

MISVGKIKQY TNVLERPLSK GKQEVSLSAF AFLFSELVQY NQTQVDNITE LERRLEDAGY  60
AVGARILELL CHREKGNRRE TRLLGILSFV HSTVWKVADS LEKGTEHEDE YMISEKELLV  120
NRFISIPKDM GAFNCGAFVA GIVRGVLENA GFPAVVTAHF VPVEGQHRPR TTILIKFAEE  180
ACAPLLAHRP PLRVVAPRMD RSSLVTTTSL VTVPLLGSSH HSESWLNAWI DPRWLRLCQV  240
GYGWHPSWVQ ACAPLLAHRP PLRVVAPRMD RSSLVTTTSL VTVPLLGSSH HSESWLNAWI  300
DPRWLRLCQV DGKVTEMNMN LSAQLNHAIP PTNHNNNNNY ASVTDDSECT VREQDRFMPI  360
ANVIRIMRKI LPPHAKISDD SKETIQECVS EFISFVTGEA NDRCQREQRK TITAEDVLWA  420
MSKLGFDDYI EPLTLHLHRY RECDSGDRGS LRGEPLMLMK PRGVVVDPAA STSINANMIP  480
INYPLPPNFT MAHHHGYFTY AHMSHDNVAS NSQANHDEAN NVEE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47670.2	6e-62	NF-YB family protein