PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHT54441.1
Organism
Capsicum baccatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family MYB
Protein Properties Length: 306aa    MW: 34924.2 Da    PI: 7.0636
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHT54441.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.73.1e-141461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W+ eEd++l++ +   G  +W++ ++  g+ R++k+c++rw +yl
       PHT54441.1 14 KGPWSSEEDKKLINFILNNGQCCWRSLPKLAGLLRCGKSCRLRWTNYL 61
                     79******************************99************97 PP
2Myb_DNA-binding48.32.3e-1571111547
                      -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++ E++  +d+++qlG++ W++Ia+++  gRt++++k++w+++
       PHT54441.1  71 SEYEEKMVIDLHAQLGNR-WSKIASHLS-GRTDNEIKNHWNTH 111
                      6779**************.*********.************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    
MGRQPCCDKN GVKKGPWSSE EDKKLINFIL NNGQCCWRSL PKLAGLLRCG KSCRLRWTNY  60
LRPDVKRGLL SEYEEKMVID LHAQLGNRWS KIASHLSGRT DNEIKNHWNT HIKKKLKKMG  120
IDPITHKPIT SDQPTYDQPP SQKDFNRQEN ENTGTCPKNI KTTTTATTTT VAMPSSETNL  180
DRQENKNVGT CPRHIKTTTT TTVVTTQSET NLDRQKIPLI PPTEILIPYE STTSSTSSFS  240
SQSSNMILED LKFLPNFDNW QSDFNMEINW TNDDFSSTLD YLLNDDDISD MNNTTISQDW  300
SQVLEV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66230.12e-86MYB family protein