PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT54695.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

HD-ZIP

Protein Properties

Length: 220aa MW: 25642 Da PI: 6.5348

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT54695.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	61.8	1.1e-19	54	107	4	57
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ++++++eq++ Le+ F ++++ e++ +LA++lgL+ rqV vWFqNrRa++k+ PHT54695.1 54 KRKLSEEQVNLLEQSFGHEHKLESERKDKLASELGLDPRQVAVWFQNRRARWKN 107 45899***********************************************95 PP
2	HD-ZIP_I/II	117.3	8.6e-38	53	144	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +kr+ls+eqv+lLE+sF +e+kLe+erK +la+eLgl+prqvavWFqnrRAR+k+k+lE++y++Lk+++++ +++rLe+ev +L+e+l+e PHT54695.1 53 RKRKLSEEQVNLLEQSFGHEHKLESERKDKLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSKLKNELETNIVDKCRLENEVLKLKEQLSE 144 8****************************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 220 aa Download sequence
MTSSMNDDQM LLISQYYPGI HTQPLPQQGE GKPRRRRKKN KGDVANGEMM MMRKRKLSEE 60 QVNLLEQSFG HEHKLESERK DKLASELGLD PRQVAVWFQN RRARWKNKKL EEEYSKLKNE 120 LETNIVDKCR LENEVLKLKE QLSEAEKEMQ RLQLERCDGI SSNSPTTSSL SMEAAMDPPF 180 LGEFGLDNAF YGPENTYYGP ANTYAQGLEW VNNLYMPYHM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	34	56	RRRRKKNKGDVANGEMMMMRKRK
2	35	57	RRRRKKNKGDVANGEMMMMRKRK
3	36	58	RRRRKKNKGDVANGEMMMMRKRK
4	37	59	RRRRKKNKGDVANGEMMMMRKRK
5	53	82	RKRKLSEEQVNLLEQSFGHEHKLESERKDK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G18550.1	2e-64	HD-ZIP family protein