PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT54829.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

HD-ZIP

Protein Properties

Length: 241aa MW: 27066.7 Da PI: 8.9233

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT54829.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57	3.4e-18	114	168	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tk q Lee F+++++++ +++++LA+kl++ rqV vWFqNrRa+ k PHT54829.1 114 RKKLRLTKVQSALLEESFKQQSTLNPKQKQHLARKLNVRPRQVEVWFQNRRARTK 168 678899***********************************************98 PP
2	HD-ZIP_I/II	116.3	1.7e-37	114	202	1	90
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +kk+rl+k q++lLEesF+++++L+p++K++lar+L+++prqv+vWFqnrRARtk+kq+E+dye+Lk+++ +l++en++L ke +eL+ + PHT54829.1 114 RKKLRLTKVQSALLEESFKQQSTLNPKQKQHLARKLNVRPRQVEVWFQNRRARTKLKQTEVDYEFLKKCCATLTDENRKLYKELQELK-A 202 69*************************************************************************************9.4 PP

Sequence ? help Back to Top
Protein Sequence Length: 241 aa Download sequence
MGSTCDDICD STGLDLCLGF SSTSNQKSRK QGQAAAIKFD LGLNLSLPGD NQIYDLKTEN 60 KRNFPSYNKD QLSAVSSYSY TSVKRERDIG SDVTEVERVI SSDCYEDDNG SNGRKKLRLT 120 KVQSALLEES FKQQSTLNPK QKQHLARKLN VRPRQVEVWF QNRRARTKLK QTEVDYEFLK 180 KCCATLTDEN RKLYKELQEL KALKIGQPLY MQLPAAAILT VCPSCERVAA AGTFTNPSAA 240 C

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	163	171	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37790.1	2e-71	HD-ZIP family protein