PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHT54852.1

Organism

Capsicum baccatum

Taxonomic ID

33114

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

ARF

Protein Properties

Length: 736aa MW: 82538.6 Da PI: 6.5487

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHT54852.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	33	1.1e-10	84	128	53	99
EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 53 rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 +++++r++lt+GW+ Fv+a++L +gD+v+F ++++ +l+++++r+ PHT54852.1 84 SRQPRRHLLTTGWSVFVSAKRLVAGDSVLFI--WNDKNQLLLGIRRA 128 688999*************************..78888899999986 PP
2	Auxin_resp	116.2	2.9e-38	153	236	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+t+s F+v++nPras+seFv++++k+ ka++ ++vsvGmRf+m fete+ss rr++Gt++g+ dldpvrW nS+Wrs+k PHT54852.1 153 AAHAAATNSCFTVFFNPRASPSEFVIPLSKYIKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGIGDLDPVRWANSHWRSVK 236 79*******************************9789****************************************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 736 aa Download sequence
MDSVINGERH VAKGEWRGGY KNVKICATCP TKIRNEVKAF VDSKAAANPK NQRCVPSYNI 60 IDDDDDVDEH QEVMPPSKSQ RMSSRQPRRH LLTTGWSVFV SAKRLVAGDS VLFIWNDKNQ 120 LLLGIRRAIR PQTVMPSSVL SSDSMHIGLL AAAAHAAATN SCFTVFFNPR ASPSEFVIPL 180 SKYIKAVYHT RVSVGMRFRM LFETEESSVR RYMGTITGIG DLDPVRWANS HWRSVKVGWD 240 ESTAGERQPR VSLWEIEPLT TFPMYPSLFP LRLKRPLYPG TSSYQDSNNE AINRMTWLRG 300 NTSELGPHSM NLQSFGMLPW MQQRVDSRII PNDINQHYQA MLATGLQSFG SGDLLKQQLV 360 QFQQPAQYLQ HASTDNSILH QQQIMLQAVH QHMQPAQTQM LSENLQRQSQ QQSNNQSEEQ 420 AHQHAYQEAF QIPHNQLQQR PSSNVSSQFL KADFADLNSK FSASVAPSGV QNMLGSLCSE 480 GSSNSLNINR TGQCVIMEQP PQQSWMSKFA ESQLNTCSNS SPLPTYEKDT SNPRENCSLD 540 SQNQVLFGAN VDSSGHLLPT RVSNVTTTCA DMSAMPLGAS GYQNSLYGYV QDSSELLHNA 600 GQIDPPNATH TFVKVYKSGC VGRSLDITQF HSYHELRREL GQMFGIEGFL EDPQRSGWQL 660 VFVDRENDIL LLGDDPWEAF VNNVWYIKIL SPEDVQKLGK EEAESLNRGA VERMSSSSVD 720 DQDLISGMPS LGSLEY

Sequence ? help Back to Top

Protein Sequence Length: 736 aa Download sequence

MDSVINGERH VAKGEWRGGY KNVKICATCP TKIRNEVKAF VDSKAAANPK NQRCVPSYNI  60
IDDDDDVDEH QEVMPPSKSQ RMSSRQPRRH LLTTGWSVFV SAKRLVAGDS VLFIWNDKNQ  120
LLLGIRRAIR PQTVMPSSVL SSDSMHIGLL AAAAHAAATN SCFTVFFNPR ASPSEFVIPL  180
SKYIKAVYHT RVSVGMRFRM LFETEESSVR RYMGTITGIG DLDPVRWANS HWRSVKVGWD  240
ESTAGERQPR VSLWEIEPLT TFPMYPSLFP LRLKRPLYPG TSSYQDSNNE AINRMTWLRG  300
NTSELGPHSM NLQSFGMLPW MQQRVDSRII PNDINQHYQA MLATGLQSFG SGDLLKQQLV  360
QFQQPAQYLQ HASTDNSILH QQQIMLQAVH QHMQPAQTQM LSENLQRQSQ QQSNNQSEEQ  420
AHQHAYQEAF QIPHNQLQQR PSSNVSSQFL KADFADLNSK FSASVAPSGV QNMLGSLCSE  480
GSSNSLNINR TGQCVIMEQP PQQSWMSKFA ESQLNTCSNS SPLPTYEKDT SNPRENCSLD  540
SQNQVLFGAN VDSSGHLLPT RVSNVTTTCA DMSAMPLGAS GYQNSLYGYV QDSSELLHNA  600
GQIDPPNATH TFVKVYKSGC VGRSLDITQF HSYHELRREL GQMFGIEGFL EDPQRSGWQL  660
VFVDRENDIL LLGDDPWEAF VNNVWYIKIL SPEDVQKLGK EEAESLNRGA VERMSSSSVD  720
DQDLISGMPS LGSLEY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G37020.1	0.0	ARF family protein